Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (CP protein), partial cds, isolate: ND257J.

ACC No: AB233065

Dated: 2007-05-23 | Length: 864 | CRC: -1480279944

                
ID   AB233065; SV 1; linear; genomic RNA; STD; VRL; 864 BP.
XX
AC   AB233065;
XX
DT   23-MAY-2007 (Rel. 91, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 1)
XX
DE   Turnip mosaic virus gene for polyprotein (CP protein), partial cds,
DE   isolate: ND257J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ND257J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="BAF62673.1"
FT                   /translation="AGETLDAGLTDEQKQAEKERKEKERAEKERERQKQLALKKGKNAA
FT                   LEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 288 A; 181 C; 227 G; 168 T; 0 other;

ab233065 Length: 864  23-MAY-2007  Type: N  Check: 7848  ..

       1  gcaggtgaaa cacttgatgc aggcctgaca gatgagcaga aacaggcaga
      51  aaaggagagg aaagagaaag agagagcaga gaaagagcgc gaaaggcaaa
     101  agcagttggc actcaagaaa ggcaaaaacg cagcattaga ggaaggcgaa
     151  cgcgacaacg aagtgaacgc cggaacctct ggaactttta gtgtgcctag
     201  gctcaaaagc ctaacgagca aaatgcgagt gccaaagtac gagaaaagag
     251  tagccctcaa tctcgatcat ctgattctgt acacgccgga gcaaacggat
     301  ctatccaata cgcgttcaac gcggaagcag tttgacactt ggtttgaagg
     351  tgtcatggct gactacgagc taacggagga taaaatgcaa ataattctca
     401  atggtttaat ggtctggtgc attgagaatg gaacctcccc aaatataaac
     451  ggaatgtggg tgatgatgga cggtgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcaaata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcggtacgca tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggtaacgtc ggcacaacgg tagagaacac
     801  ggaaaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gtta