Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (CP protein), partial cds, isolate: OB995J.

ACC No: AB233069

Dated: 2007-05-23 | Length: 864 | CRC: 294058862

                
ID   AB233069; SV 1; linear; genomic RNA; STD; VRL; 864 BP.
XX
AC   AB233069;
XX
DT   23-MAY-2007 (Rel. 91, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 1)
XX
DE   Turnip mosaic virus gene for polyprotein (CP protein), partial cds,
DE   isolate: OB995J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="OB995J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="BAF62677.1"
FT                   /translation="AGETLDAGLTEEQKQAEKEKKEREKAEKERERQKQLALKKGKDVT
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQLILNGLVVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 284 A; 177 C; 235 G; 168 T; 0 other;

ab233069 Length: 864  23-MAY-2007  Type: N  Check: 8950  ..

       1  gcaggtgaga cgcttgatgc aggtttgaca gaagagcaaa agcaggcgga
      51  aaaggagaag aaggagagag agaaggcaga aaaggaacga gaaaggcaga
     101  agcagttggc actcaagaaa ggcaaggatg ttacacaaga agagggaaaa
     151  cgcgataagg aagtaaacgc tggaacctct ggaactttca gtgtacccag
     201  acttaagagt ttgacaagca agatgcgcgt gccaagatac gagcaaagag
     251  tggctctaaa tctcgaccat ctgatcttgt acacgccgga gcagacggat
     301  ctatccaaca cgcgttcaac gcgaaagcag tttgacacat ggtttgaagg
     351  tgtaatggct gattacgaac tgacggagga caaaatgcaa ctcattctca
     401  atggtttagt ggtctggtgc attgagaacg gaacctctcc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgcg tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaagc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggaaacgtt ggcacaacgg tagagaacac
     801  ggagaggcac acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gtta