Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (P1 protein), partial cds, isolate: FD997J.

ACC No: AB233078

Dated: 2007-05-23 | Length: 1086 | CRC: -358741005

                
ID   AB233078; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233078;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: FD997J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="FD997J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8F2"
FT                   /protein_id="BAF36848.1"
FT                   /translation="MAAVTFASAITNAITNKPASTGMVQFGNFPPVPLRTTVATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGPGSSAKATRQQPSIAPDASLREAAALEVVKPKPNAVL
FT                   RKHEEANKERALFLDWEASLKRQSYGIAENEKVVMTTRGISKIVPRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPQLSTLSIGGGPAANVIEAEEVRTKWPLHKTPSMKKKTVFKACRMSN
FT                   QGIDMLVRSLIKIFKAKNATIEYTAKKSIHVDFIRKERTKFARVQVAHLLGKRAQRDLL
FT                   TGVAENHFIDTLSGYSGNKRVISPGVVRAGWSGIIIRNGALNQSQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKTMSHKIVHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 332 A; 262 C; 290 G; 202 T; 0 other;

ab233078 Length: 1086  23-MAY-2007  Type: N  Check: 4798  ..

       1  atggcagcag tcacattcgc atcagcaatc accaacgcca tcaccaacaa
      51  accagcatcc accggaatgg tacaatttgg gaatttccca ccagtgccat
     101  tgcgaaccac cgtcgctacc acagtcgcca ccccagtggc gcaacctaaa
     151  ctgtacacgg tacagtttgg aagtcttgac ccagtagtcg ttaagggtgg
     201  accagggtcc tctgctaagg caacccgcca gcagcctagc attgcaccag
     251  atgctagcct cagggaagcc gcagctttgg aggttgtaaa acccaagccg
     301  aatgccgtgt tgagaaagca cgaggaggca aacaaagagc gagcgctctt
     351  cttggactgg gaagccagtc tgaaaaggca atcatatggc attgctgaga
     401  acgagaaagt cgtgatgaca actcgtggca tcagtaagat agttcccaga
     451  agttcacggg cgatgaagca aaagcgcgca agggagaggc gcagggcaca
     501  acaaccaatt gtgctaaaat gggagccaca actgagcaca ctctccattg
     551  gaggagggcc tgccgcaaat gttattgagg cggaggaagt gcgcacaaag
     601  tggccactac acaaaacacc gtcaatgaag aaaaagacgg tgttcaaagc
     651  gtgcagaatg agcaaccaag gaattgacat gctagtgcgt tccttgatca
     701  agatcttcaa ggcgaagaac gccaccatcg aatacactgc aaagaagtct
     751  atccacgtag acttcatcag aaaggagcga acaaagtttg cccgagttca
     801  ggtggcgcat ttacttggta aacgagcaca acgtgacctg ttgactggag
     851  tggcagaaaa ccacttcatt gacactctca gtggttactc aggtaacaag
     901  agagtcataa gcccaggggt agtgcgtgcc ggctggagtg gaataatcat
     951  taggaacgga gctctcaacc agagtcagag taggagtcca tcgcaggctt
    1001  tcgtgatcag aggcgaacat gaaggcaaat tgtatgatgc cagggttaag
    1051  gtcacgaaga ctatgagcca taagatcgtg cattat