Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (P1 protein), partial cds, isolate: KGD949J.

ACC No: AB233093

Dated: 2007-05-23 | Length: 1086 | CRC: -288797329

                
ID   AB233093; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233093;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: KGD949J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="KGD949J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8G7"
FT                   /protein_id="BAF36863.1"
FT                   /translation="MAAVTFASAITNATINKPASTGMVQFGNFPPVPLRTTTATIVTTP
FT                   VVQPKLYTVQFGSLDPVVVEGKAGSSAKVTRQQPSVGINASLREAAALEVAKPKPNAVL
FT                   RMHEEANKERALFLDWETSLKRQSYGIAEHEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQHPIVLKWEPQMSQFSIGGGPAANVMEAEEVRTQWPLHKTPSMKKKMVFKACRMNN
FT                   QGIDMLMRSLIKIFKAKNATIEYTVKKSINIDFVRKERTKFARIQVAHMLGRRAQRDLL
FT                   TGVEENHFIDTLSSYSGNKRTISPGVVCAGWSGIVIRNGVLIQNQSRSPSQAFVVRGEH
FT                   EGKLYDARVKVTKVMSHKIVHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 344 A; 252 C; 284 G; 206 T; 0 other;

ab233093 Length: 1086  23-MAY-2007  Type: N  Check: 6662  ..

       1  atggcagcag tcacattcgc atcagcaatc accaacgcca ccatcaacaa
      51  gccagcatcc accggaatgg tacagtttgg gaatttcccg ccagtaccac
     101  tacgaaccac caccgctacc atagtcacca ccccagtggt gcagcctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagttg tcgagggtaa
     201  agcagggtct tctgctaagg taacccgcca gcagcctagc gttggaataa
     251  acgctagcct cagggaagcc gcagctttag aggttgcgaa gcccaaacca
     301  aatgccgtgt taaggatgca cgaggaagcg aacaaagagc gagcactctt
     351  cttggactgg gaaaccagcc tgaaaaggca atcgtatggc atcgctgagc
     401  acgagaaagt cgtaatgaca actcgtggcg tcagcaagat agtgcccagg
     451  agttcacggg cgatgaaaca aaagcgcgca agagagaggc gcagggcgca
     501  acatccaatt gtgctgaaat gggagccaca gatgagccag ttctctatcg
     551  gaggaggacc tgccgcaaat gtgatggagg cagaggaggt tcgcacacag
     601  tggccactac acaaaacacc atcaatgaag aagaagatgg tgtttaaagc
     651  gtgcagaatg aacaaccaag gaatcgacat gctgatgcgt tccttgatta
     701  agattttcaa ggcaaagaat gccaccattg agtacactgt gaaaaagtct
     751  atcaatatag actttgttag aaaggagcga acaaagttcg ctagaatcca
     801  ggtagcacat atgcttggta gaagagcaca acgtgaccta ttaaccggag
     851  tggaagaaaa ccacttcatt gacactctca gtagttactc aggtaacaag
     901  agaaccataa gcccaggagt ggtttgtgct ggctggagtg gaatagtcat
     951  cagaaatgga gttctcattc agaaccagag caggagcccg tcacaagcct
    1001  ttgtggtcag aggagaacat gaaggcaaat tgtatgacgc cagggttaaa
    1051  gtcacgaagg tcatgagtca taaaatcgtg cactac