Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (P1 protein), partial cds, isolate: MD47J.

ACC No: AB233100

Dated: 2007-05-23 | Length: 1086 | CRC: 937048133

                
ID   AB233100; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233100;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: MD47J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="MD47J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8H4"
FT                   /protein_id="BAF36870.1"
FT                   /translation="MAAVTFATAITNTTASRSASTGMVQFGNFPPVPLRSTTATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLRRSSYGIAENEKVVMTARGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPESSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLVRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNKKTINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 341 A; 230 C; 300 G; 215 T; 0 other;

ab233100 Length: 1086  23-MAY-2007  Type: N  Check: 5841  ..

       1  atggcagcag ttacatttgc aaccgcaatc actaacacca ccgcaagcag
      51  atcagcatcc accggaatgg tacagtttgg gaacttccca ccagtgccat
     101  tgcgatccac caccgccacc acagtcgcca ctccagtggc gcagcctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcaaa acctagaccg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggccagtt tgaggagaag ctcgtatgga attgctgaga
     401  acgagaaagt tgtaatgaca gctcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggagaggc gtagagcgca
     501  acaaccaatt atactaaagt gggagcccga atcgagcgga atctcaattg
     551  gaggagggct ttctgcgagc gcgatcgaag cagaagaagt tcgcacaaag
     601  tggccgttgc ataaaacacc atcaatgaag aggaagacgg tgcacagaag
     651  atgcaagatg aatgatcaag gaattgacat gttagtgcgt tctttgatta
     701  aaatctttaa ggcgaagagt gcgaacattg agttcattgg gaggaagtcc
     751  attaaagtgg attttgtaaa gaaagagcaa acgaagtttg ccagagtgca
     801  agtagtgcat ttgctcggaa agcgggcaca acgcgacctg ttgactggtg
     851  cagaagaaaa ccacttcatt gacaccctaa gcacatactc aggaaataag
     901  aaaaccataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat
     951  cagaaacggc attttgactc agaagcagag cagaagtcct tcgcaagcct
    1001  ttgtgattcg aggagaacat gaagggaagt tgtatgacgc cagggttaag
    1051  gtcacaaagg tgatgagcca taaaatcata cactat