Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (P1 protein), partial cds, isolate: MD49J.

ACC No: AB233101

Dated: 2007-05-23 | Length: 1086 | CRC: -362436704

                
ID   AB233101; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233101;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: MD49J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="MD49J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8H5"
FT                   /protein_id="BAF36871.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGNFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSSAKATRQQPNVEIDVSLSEAAALEVAKPKPNAVL
FT                   RMHEEMNKERALFLDWETNLTRRSYGIADNEKVIMTARGVSKIVLRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPKLSTISIGGGPSANMIEAEEIRTKWPLHKTPSMKRKMVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQSKFARVQVAHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIMHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 347 A; 238 C; 283 G; 218 T; 0 other;

ab233101 Length: 1086  23-MAY-2007  Type: N  Check: 5117  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca tcaccaataa
      51  accagcactc accggaatgg tacagtttgg gaatttccca ccagtgccac
     101  tgcgatccac caccgtcacc acagtcgcca cttcagtggc gcaacctaag
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tctgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctttgg aggttgcgaa acccaaaccg
     301  aatgccgtgt taaggatgca cgaggaaatg aacaaggaga gagcactctt
     351  cttagactgg gaaaccaatt taacaaggcg ctcatatggc attgctgaca
     401  acgagaaggt catcatgaca gctcgtggtg ttagcaaaat agtgcttagg
     451  agctcaaggg cgatgaaaca aaagcgcgca agagaaaggc gcagggcaca
     501  acaaccaatt gtgctgaaat gggagcccaa gttgagcaca atctcaattg
     551  gaggaggacc ctccgcaaac atgattgagg cagaagagat tcgcacgaag
     601  tggccgctgc ataaaacacc atcaatgaag aggaagatgg tgcacagaag
     651  atgcaagatg aatgatcaag gaattgacat gttaatgcgt tctttgatca
     701  aaatttttaa ggcgaagagt gcgaacattg agttcattgg aaggaagtcc
     751  attaaagtgg atttcgtaaa gaaagagcaa tcgaagtttg ccagagtaca
     801  agtagcacat ttgctcggaa agcgggcaca acgcgacctg ttgactggtg
     851  ctgaagagaa ccacttcatt gacaccctaa gcacctactc aggaaatagg
     901  aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat
     951  cagaaacggc attttgactc agaagcagag cagaagtcct tcgcaagcct
    1001  ttgtgattcg aggagaacat gaagggaagt tgtacgacgc cagagttaag
    1051  gtcacaaagg tgatgagcca taaaatcatg cactat