Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (P1 protein), partial cds, isolate: ND264J.

ACC No: AB233115

Dated: 2007-05-23 | Length: 1086 | CRC: 1741995171

                
ID   AB233115; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233115;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: ND264J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ND264J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8I9"
FT                   /protein_id="BAF36885.1"
FT                   /translation="MAAVTFASAITNAITDRPALTGMVQFGNFPPMPLRSATATTVATS
FT                   VAQPKLYTVQFGSLDPVVIKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWETSLKRSSYGIAENEKVVITTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSEISIGGGLSASAIEAEEVRTKRPLHKTPSMKKRTVHRICRMND
FT                   QGVDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDISSGYSGNKTTINPGVVCAGWSGIVVRDGILTQKRSRSPSKAFVIRGEH
FT                   EGKLYDARVKITRTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 351 A; 241 C; 287 G; 207 T; 0 other;

ab233115 Length: 1086  23-MAY-2007  Type: N  Check: 176  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca tcaccgatag
      51  accagcactc accggaatgg tacagtttgg gaatttccca ccaatgccat
     101  tgcgatccgc caccgccacc acagtcgcca cttcagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtca tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagatcg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaaactagtt tgaagagaag ctcgtatgga attgctgaga
     401  acgagaaagt tgtaataaca actcgtggcg tcagcaagat agtgcccaga
     451  agctcaaggg caatgaagca aaagcgcgca agggagaggc gtagagcgca
     501  gcaaccaatt atactaaagt gggagcccaa attgagcgag atctcaatcg
     551  gaggagggct ctctgcgagc gcgatcgaag cagaagaggt tcgcacaaag
     601  cggccacttc ataagacacc gtcaatgaag aagaggacgg tgcacagaat
     651  atgcaggatg aacgaccaag gagttgacat gttgacacga tccctggtta
     701  agattttcaa aaccaagagt gctaacattg agtacatcgg gaagaagtcg
     751  attaaggtcg atttcatcag aaaagaacgg acgaaattcg caagaattca
     801  agtagcacac ttactcggga agagagcaca gcgcgactta tcaactggaa
     851  tggaggaaaa ccatttcatt gacatctcca gcgggtactc aggtaacaaa
     901  acaaccataa atccaggagt agtctgcgca ggttggagtg gcatagtcgt
     951  tagagatgga attctaaccc agaaacgaag cagaagtcca tcaaaggcct
    1001  ttgtaattag aggtgagcac gaaggcaagt tgtacgatgc cagagttaaa
    1051  atcacgagga caatgagcca caagattgtg cacttt