Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro protein), partial cds, isolate: KD834J.
ACC No: AB233128
Dated: 2007-05-23 | Length: 1527 | CRC: -1482479962
ID AB233128; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC AB233128;
XX
DT 17-NOV-2006 (Rel. 89, Created)
DT 23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE protein), partial cds, isolate: KD834J.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomitaka Y., Ohshima K.;
RT "A phylogeographical study of the Turnip mosaic virus population in East
RT Asia reveals an 'emergent' lineage in Japan";
RL Mol. Ecol. 15:4437-4457(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /organism="Turnip mosaic virus"
FT /isolate="KD834J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12230"
FT CDS <1. .>1527
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:A0P8K2"
FT /db_xref="UniProtKB/TrEMBL:A0P8K2"
FT /protein_id="BAF36898.1"
FT /translation="TDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT LVICGVFGGGIWMIIQHLRSKLSEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT TDISLVQKHFGDIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT CDLHATIAGFPEREHELRQTGKAQPIDISEIPKANTELAPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 497 A; 336 C; 351 G; 343 T; 0 other;
ab233128 Length: 1527 23-MAY-2007 Type: N Check: 3405 ..
1 accgacggaa tatcccgtca tttcatgagt gagtatggag cactcgaggc
51 agttcaccat cagaacacta atgacatgag caaattccta aagctcaagg
101 gcaaatggaa taaaacgttg atcacacgag acgtgttggt gatctgtgga
151 gtctttggag gtggaatttg gatgataatc caacacctgc gttcaaaact
201 ttctgaacct gtaacccatg aggcaaaagg gaagaggcag agacagaaac
251 taaagtttcg caatgcccga gacaataaga tgggtagaga ggtatacgga
301 gacgacgacg tcatagaaca cttctttgga gatgcctaca caaagaaggg
351 aaagagcaaa ggcagaacac gtggcctcgg ccataagaac aggaagttca
401 tcaatatgta tggatttgat cctgaagact tctcagcagt cagattcgta
451 gatccactta caggagctac gctagacgat aatccattca cggacatctc
501 ccttgtgcaa aaacactttg gagatattcg gatggatctg cttggagaag
551 atgaactgga accagatgag ttgcgaatga acaagacgat tcaggcctac
601 tacatgaaca ataaaacagg taaagccctg aaggtggatt tgacaccaca
651 cgtaccactc aaggtatgcg atcttcacgc aaccatcgct ggtttcccgg
701 aacgagaaca cgaactcagg caaactggca aagctcagcc tatagacata
751 agcgaaatac ctaaggctaa tactgagcta gccccagttg accatgaaag
801 cagttccatg ttcagagggt tgcgcgacta caacccgata tctaacaaca
851 tttgtcacct aacaaatgta tcggacggag catcaaactc gttatatggt
901 gttggttttg ggccactcat actaacgaac cggcatcttt tcgaacggaa
951 taatggcgag ttagtgatta aatctagaca tggtgagttc gtgattaaaa
1001 acacaactca attacatttg ctgccaattc cggatcggga tttattgcta
1051 atccgactac caaaggacat tccacctttc ccgcaaaaac taggctttag
1101 acaacctgag aagggtgaga ggatctgtat ggtaggatcc aacttccaaa
1151 ctaagagcat tactagtgtg gtttctgaga ccagcacgat tatgccagtg
1201 gagaatagcc aattttggaa acattggatt agcactaaag atggccaatg
1251 tgggagccca atggtgagca caaaggatgg aaagatacta gggctacaca
1301 gcctagcaaa tttccaaaac tccatcaact actttgctgc cttcccagat
1351 gattttgctg agaaatatct ctacaccatc gaagcacacg agtgggttaa
1401 acactggaag tacaacacca gtgcgattag ttggggctct ttaaacatac
1451 aagcctcgca accagcaggc ttgttcaaag tgagcaaact catatcagac
1501 ctcgacagca cagcagtgta tgcacaa