Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro protein), partial cds, isolate: MD49J.
ACC No: AB233149
Dated: 2007-05-23 | Length: 1527 | CRC: -1647168863
ID AB233149; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC AB233149;
XX
DT 17-NOV-2006 (Rel. 89, Created)
DT 23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE protein), partial cds, isolate: MD49J.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomitaka Y., Ohshima K.;
RT "A phylogeographical study of the Turnip mosaic virus population in East
RT Asia reveals an 'emergent' lineage in Japan";
RL Mol. Ecol. 15:4437-4457(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /organism="Turnip mosaic virus"
FT /isolate="MD49J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12230"
FT CDS <1. .>1527
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:A0P8M3"
FT /db_xref="UniProtKB/TrEMBL:A0P8M3"
FT /protein_id="BAF36919.1"
FT /translation="TDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT LVLCGVLGGGLWMVFQHLRSKISEPVTHEAKGKRQRQKLKFRSVRDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT TDIALVQEHFGNIRMDLLGEDELDANEVRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 486 A; 341 C; 362 G; 338 T; 0 other;
ab233149 Length: 1527 23-MAY-2007 Type: N Check: 6913 ..
1 accgatggaa tatctcggca ttttatgagt gagtatggag ctcttgaggc
51 agttcaccat caaaacacca gcgacatgag caaattcctc aagcttaagg
101 gcaaatggaa caaaacgcta atcacgcgag atgtgttagt gctttgtgga
151 gtccttggag gtggattgtg gatggttttt cagcacctgc ggtcaaagat
201 ctccgaaccc gtaacccacg aagcgaaagg caagaggcaa aggcagaaac
251 taaagtttcg cagcgtccga gacaacaaga tgggcagaga agtgtacgga
301 gatgatgata ccatagaaca tttcttcggt gatgcctaca caaagaaagg
351 gaagagcaag ggtaggacac gtggtctcgg acacaagaat agaaagttca
401 tcaacatgta tgggttcgat cctgaagatt tctctgcagt tcgcttcgtg
451 gatccactca caggagctac gttggacgac aacccgttca cagacatcgc
501 ccttgtgcaa gagcactttg gtaacataag aatggactta ctcggggagg
551 atgagctgga cgcaaatgag gtacgcatga ataagacaat tcaggcctac
601 tacatgaaca ataaaacagg caaggctttg aaggtggatt tgacaccaca
651 catacctctc aaggtgtgtg atcttcatgc aaccattgct ggattcccag
701 agcgagaaaa cgaactgagg caaactggaa aggctcagcc cattaacata
751 gacgaagtgc caagagctaa caatgaactc gtcccagtgg accacgagag
801 taactccatg ttcagagggt tgcgtgatta caacccaata tcaaacaaca
851 tttgtcatct cacaaatgtt tcagatggag catcaaactc gttgtatgga
901 gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa
951 taacggtgaa ctcataataa aatcacgaca tggtgagttc gtgattaaga
1001 acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
1051 atccggttac caaaggacgt cccacccttt ccacagaaat tgggtttcag
1101 gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc aatttccaaa
1151 ccaagagcat aacgagtgta gtctctgaga ctagtacaat aatgccagtg
1201 gaaaacagtc agttttggaa acactggatt agcacgaaag acggccaatg
1251 cggaagtcca atggtgagca cgaaagacgg gaaaatactt ggactacaca
1301 gcctagcaaa cttccaaaac tccatcaatt actttgctgc tttcccagat
1351 gattttgccg agaagtatct tcataccatc gaagcacacg agtgggtcaa
1401 gcattggaaa tacaacacta gtgctatcag ttggggctct ttgaatatac
1451 aagcatcgca accgtcaggc ttgttcaaag taagcaagct aatctcagac
1501 ctcgatagca cggcagtcta cgcacaa