Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro protein), partial cds, isolate: SN4J.
ACC No: AB233173
Dated: 2007-05-23 | Length: 1527 | CRC: -1124868816
ID AB233173; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC AB233173;
XX
DT 17-NOV-2006 (Rel. 89, Created)
DT 23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE protein), partial cds, isolate: SN4J.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomitaka Y., Ohshima K.;
RT "A phylogeographical study of the Turnip mosaic virus population in East
RT Asia reveals an 'emergent' lineage in Japan";
RL Mol. Ecol. 15:4437-4457(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /organism="Turnip mosaic virus"
FT /isolate="SN4J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12230"
FT CDS <1. .>1527
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:A0P8P7"
FT /db_xref="UniProtKB/TrEMBL:A0P8P7"
FT /protein_id="BAF36943.1"
FT /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT LVICGVLGGGIWMIIQHLRMKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGEDDV
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT MDIALVQEHFGKIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPEREHELRQTGKAQPMDLSEVPKANTELIPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPERGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 492 A; 318 C; 364 G; 353 T; 0 other;
ab233173 Length: 1527 23-MAY-2007 Type: N Check: 4534 ..
1 tctgacggga tttctcgcca ttttatgagt gaatatggag cactcgaggc
51 agttcaccac caaaacacca acgacatgag caagttctta aagctgaagg
101 gcaaatggaa caaaacgctt atcacgcgtg atgtgttagt gatttgtgga
151 gttcttggag gtggaatatg gatgatcatc caacacctgc gtatgaagat
201 ctccgaaccc gtgacccacg aggcaaaggg caagaggcag agacaaaagt
251 tgaagtttcg caatgcccgc gacaacaaaa tgggtaggga ggtctatgga
301 gaagacgacg tcattgaaca cttctttgga gatgcctaca caaagaaggg
351 aaagagtaaa ggcagaactc gtggcctcgg ccataaaaac aggaaattca
401 tcaatatgta tggatttgat cctgaagact tctctgcagt tagattcgta
451 gatccactca caggggcaac gatagatgaa agtccaatca tggatatagc
501 ccttgtgcag gaacattttg gaaaaatacg gatggattta cttggagaag
551 acgaactgga acccgatgag ttgcgaatga ataagacgat tcaggcttac
601 tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca
651 cataccacta aaggtatgtg accttcatgc aacaattgct ggtttcccgg
701 aacgagaaca cgaactgagg caaactggaa aagctcagcc catggactta
751 agtgaagtac ccaaagctaa cactgagcta attccagttg accatgaaag
801 tagctccatg tttagagggt tgcgcgacta caacccaata tccaataaca
851 tttgtcatct tacaaatgtg tcagatggag catcaaattc gttgtatggg
901 gttggttttg gaccactcat attaacgaac cggcatctct ttgaaaggaa
951 taatggtgaa cttgtgataa agtcaagaca tggtgagttt gtgattaaga
1001 acacgactca gctacacttg ctaccgattc cggacaggga ccttctgcta
1051 atccgactac ctaaagacat tccacccttc ccgcaaaaac tgggatttag
1101 acaacctgag aggggtgaga ggatctgtat ggtaggttcc aactttcaaa
1151 caaagagcat tacgagtgta gtttctgaga ctagcacgat aatgccagtg
1201 gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg
1251 tggaagtccg atggtgagca caaaggatgg aaaaatactt gggctacaca
1301 gcctggcaaa tttccaaaat tccatcaact actttgctgc cttcccagat
1351 gattttgctg agaagtacct ccacactatt gaggcacacg agtgggtcaa
1401 gcattggaag tataacacca gtgcaattag ttggggctcc ctaaatatac
1451 aagcatcgca gccagcgggc ttatttaaag tgagcaaact aatatcagac
1501 ctcgacagca cagcagttta tgcgcaa