Sequence of DPV Satsuma dwarf virus

Citrus mosaic sadwavirus RdRp gene for RNA-dependent RNA polymerase, partial cds, segment RNA1-1v.

ACC No: AB247635

Dated: 2007-04-21 | Length: 1139 | CRC: -406050444

                
ID   AB247635; SV 1; linear; genomic RNA; STD; VRL; 1139 BP.
XX
AC   AB247635;
XX
DT   21-APR-2007 (Rel. 91, Created)
DT   21-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE   Citrus mosaic sadwavirus RdRp gene for RNA-dependent RNA polymerase,
DE   partial cds, segment RNA1-1v.
XX
KW   .
XX
OS   Citrus mosaic sadwavirus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sadwavirus.
XX
RN   [1]
RP   1-1139
RA   Ito T.;
RT   ;
RL   Submitted (24-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Takao Ito, National Institute of Fruit Tree Science, Department of Citrus
RL   Research; Otsu 954, Kuchinotsu, Nagasaki 859-2501, Japan
RL   (E-mail:itotaka@affrc.go.jp, Tel:81-957-86-2306, Fax:81-957-86-4268)
XX
RN   [2]
RA   Ito T., Ito T., Shiotani H., Iwanami T., Ozaki K., Muramoto K.;
RT   "Genetic diversity and a heterogeneous population of Citrus mosaic virus
RT   within a single citrus tree";
RL   J. Gen. Plant Pathol. 73:147-151(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1139
FT                   /organism="Citrus mosaic sadwavirus"
FT                   /segment="RNA1-1v"
FT                   /isolate="97032"
FT                   /mol_type="genomic RNA"
FT                   /note="synonym: Citrus mosaic virus"
FT                   /db_xref="taxon:57325"
FT   CDS             <1. .961
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="BAF56878.1"
FT                   /translation="FKWSWMGLMREAGYAQMASLYAFYEATEISLYGDDNFVSVATAVA
FT                   SVYNLETISNFLSRVGVKLGDGAKSGTIKPFIPLEEVDFLKRQFVADSGSTAILCPLKK
FT                   ISIEERLFYVKGGQDELAALELNVATALCEAFFHGKEYFALLEKRIIEAVHKSGIRLTK
FT                   PLPTMESIRVWYLSQRSNTKVRSPSYEGLGTMSGILAVGLSEAKNVGGISFYSGADFKG
FT                   HTEVHLNVVPTFILGGKKISKGQTHISFIRNAAKMADIIRGLGEFECVVGTDKIMAYIV
FT                   AICLAYRHKRISRMEVRCHVQLLNTVDATFCNNICNDL"
XX
SQ   Sequence 1139 BP; 305 A; 223 C; 266 G; 345 T; 0 other;

ab247635 Length: 1139  21-APR-2007  Type: N  Check: 2549  ..

       1  ttttaagtgg agttggatgg gcttaatgag agaggctggg tatgcccaaa
      51  tggcatccct ttatgcgttt tatgaagcta ctgagatttc cctgtatggg
     101  gatgacaatt ttgtctcagt ggctactgct gtggcctctg tctacaacct
     151  agaaacaatc tcgaatttcc tatcaagggt tggagtgaaa ttgggtgatg
     201  gtgccaaatc tggtactatt aagccattta taccccttga agaggtggat
     251  ttcttgaagc gacaattcgt agctgattcc gggtcaactg cgatattgtg
     301  cccgctcaag aaaatctcaa tcgaagagag attgttctat gttaagggtg
     351  gtcaagacga attagccgct cttgaactca acgttgcaac agctctgtgc
     401  gaagcctttt tccatggaaa ggaatacttt gcactgctgg agaagcgaat
     451  tattgaagca gtccacaaga gtggtattcg tctaaccaaa cccctaccca
     501  ctatggagtc cattagggtg tggtaccttt ctcaacgatc aaacactaag
     551  gtacgctcac cctcctacga gggcttagga acgatgtctg ggatattggc
     601  tgtaggtctc tcagaagcta aaaacgtagg tgggatttct ttctactctg
     651  gcgcagattt taagggtcac accgaggtgc acctcaacgt ggtacccaca
     701  tttattctcg ggggaaagaa aatttccaag ggacaaactc acatatcctt
     751  tattcgtaat gctgctaaga tggcagatat tattcgaggt ttaggtgagt
     801  tcgagtgcgt tgttggaact gataaaatta tggcgtatat tgttgcaata
     851  tgtctcgcat ataggcacaa aagaatttcc agaatggaag ttaggtgcca
     901  cgtgcaattg ctcaacacag tcgatgcaac attttgcaac aatatttgca
     951  acgatcttta gttagatcga ctaggtgatg cccaccggac ctaaacgtgg
    1001  gataatatgt aaatacttgt gtgtattttc tatttgagtg ttttgtttgt
    1051  tttcttaaaa taaactggat ttcaaaaagg gtttctcgaa ttcttccctt
    1101  tccgatccag gaattccgcg tgttttactt gatttccaa