Sequence of DPV Satsuma dwarf virus

Citrus mosaic sadwavirus RdRp gene for RNA-dependent RNA polymerase, partial cds, segment RNA1-2.

ACC No: AB247636

Dated: 2007-04-21 | Length: 1139 | CRC: -1221330692

                
ID   AB247636; SV 1; linear; genomic RNA; STD; VRL; 1139 BP.
XX
AC   AB247636;
XX
DT   21-APR-2007 (Rel. 91, Created)
DT   21-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE   Citrus mosaic sadwavirus RdRp gene for RNA-dependent RNA polymerase,
DE   partial cds, segment RNA1-2.
XX
KW   .
XX
OS   Citrus mosaic sadwavirus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sadwavirus.
XX
RN   [1]
RP   1-1139
RA   Ito T.;
RT   ;
RL   Submitted (24-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Takao Ito, National Institute of Fruit Tree Science, Department of Citrus
RL   Research; Otsu 954, Kuchinotsu, Nagasaki 859-2501, Japan
RL   (E-mail:itotaka@affrc.go.jp, Tel:81-957-86-2306, Fax:81-957-86-4268)
XX
RN   [2]
RA   Ito T., Ito T., Shiotani H., Iwanami T., Ozaki K., Muramoto K.;
RT   "Genetic diversity and a heterogeneous population of Citrus mosaic virus
RT   within a single citrus tree";
RL   J. Gen. Plant Pathol. 73:147-151(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1139
FT                   /organism="Citrus mosaic sadwavirus"
FT                   /segment="RNA1-2"
FT                   /isolate="97032"
FT                   /mol_type="genomic RNA"
FT                   /note="synonym: Citrus mosaic virus"
FT                   /db_xref="taxon:57325"
FT   CDS             <1. .961
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="BAF56879.1"
FT                   /translation="FKWSWMGLMREAGYAQMASLCAFHEATEISLYGDDNFVSVATAVA
FT                   SVYNLETISNFLSRVGVKLGDGAKSGTIKPFIPLEEVDFLKRQFIADSGSTAILCPLKK
FT                   ISIEERLFYVKGGQDELAALELNVATALCEAFFHGKEYFALLEKRIIEAVHKSGIRLTK
FT                   PLPTMESIRVWYLSQRSNTKVRSPSYEGLGMMSGILAVGLSETKNVGGISFYSGASFKG
FT                   RTEVHLNVVPTFILGGKKISKGQTHISFIRNAAKMADIIRGLGEFECVVGTDKVMAYIV
FT                   AICLAYRHKRISRMEVRCHVQLLNTIDATFCNNICNDL"
XX
SQ   Sequence 1139 BP; 298 A; 212 C; 273 G; 356 T; 0 other;

ab247636 Length: 1139  21-APR-2007  Type: N  Check: 8986  ..

       1  ttttaagtgg agttggatgg gcttgatgag agaggctggg tatgcccaaa
      51  tggcatccct ctgtgcgttc catgaagcca ctgagatttc cctgtatggg
     101  gatgacaact ttgtctccgt ggctactgct gtagcctctg tctataactt
     151  agaaacaatc tcgaatttcc tgtcaagggt tggagtgaaa ttgggtgatg
     201  gtgccaaatc tggtaccatt aaaccgttta taccccttga agaggtggat
     251  ttcttgaagc ggcaattcat agctgattcc gggtcaactg cgatattgtg
     301  tccgctcaag aaaatctcaa ttgaagagag attgttctat gttaagggtg
     351  gtcaagatga attagctgct cttgaactta atgtcgcgac agctttgtgc
     401  gaagcctttt tccatggaaa ggaatatttt gcactgctgg agaagcgaat
     451  tatcgaagca gtccacaaga gtggaattcg tctgaccaaa cccctaccca
     501  ctatggagtc catcagggtg tggtaccttt ctcaacgatc aaacactaag
     551  gtacgctcac cttcctacga gggcttagga atgatgtctg ggatactggc
     601  tgtaggtctc tcagaaacta aaaacgtagg tggaatttct ttctactctg
     651  gtgcaagttt taagggtcgc actgaggtgc acctcaacgt ggtacccaca
     701  tttattcttg ggggaaagaa aatttccaag ggacaaactc acatatcctt
     751  tattcgtaat gctgctaaga tggcagatat tattcgaggt ttaggtgagt
     801  tcgagtgcgt tgttggaact gataaagtta tggcgtatat tgttgcaata
     851  tgtcttgcat atagacataa aagaatttcc agaatggagg ttagatgtca
     901  tgtgcagttg ctcaacacga ttgatgcaac attttgcaac aatatttgca
     951  acgatcttta gttagatcga ttaggtgatg cccaccggac ctaaacgtgg
    1001  gataatatgt aaatacttgt gtgtgttttc tatttgagtg ttttgtttgt
    1051  tttcttaaaa taaactggat ttcaaaaagg gtttcttgag ttcttccctt
    1101  tccgatccgg gaacttcgcg tgttttactt gatttccaa