Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus genomic RNA, RNA3 segment, complete sequence, strain: ON.
ACC No: AB248752
Dated: 2008-12-02 | Length: 2215 | CRC: -1169916327
ID AB248752; SV 1; linear; genomic RNA; STD; VRL; 2215 BP.
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AC AB248752;
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DT 04-FEB-2006 (Rel. 86, Created)
DT 02-DEC-2008 (Rel. 98, Last updated, Version 3)
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DE Cucumber mosaic virus genomic RNA, RNA3 segment, complete sequence, strain:
DE ON.
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KW .
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OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
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RN [1]
RP 1-2215
RA Takami K., Takeshita M., Takanami Y.;
RT ;
RL Submitted (02-FEB-2006) to the EMBL/GenBank/DDBJ databases.
RL Contact:Minoru Takeshita Graduate School of Kyushu University, Faculty of
RL Agriculture; 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
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RN [2]
RA Takami K., Okubo H., Yamasaki S., Takeshita M., Takanami Y.;
RT "A Cucumber mosaic virus isolated from Momordica charantia L.";
RL J. Gen. Plant Pathol. 72:391-392(2006).
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FH Key Location/Qualifiers
FH
FT source 1. .2215
FT /organism="Cucumber mosaic virus"
FT /segment="RNA3"
FT /host="Momordica charantia"
FT /strain="ON"
FT /isolate="CMV-ON"
FT /mol_type="genomic RNA"
FT /country="Japan:Oita Pref."
FT /collected_by="Takami Keiji"
FT /collection_date="2005"
FT /identified_by="Takami Keiji"
FT /clone="pCON3"
FT /note="subgroup I"
FT /db_xref="taxon:12305"
FT CDS 121. .960
FT /codon_start=1
FT /transl_table=1
FT /gene="3a"
FT /product="3a protein"
FT /protein_id="BAE79158.1"
FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT CDS 1258. .1914
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="BAE79159.1"
FT /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSSDANFRVLSQQLSRLNKT
FT LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
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SQ Sequence 2215 BP; 514 A; 527 C; 528 G; 646 T; 0 other;
ab248752 Length: 2215 02-DEC-2008 Type: N Check: 2585 ..
1 gtaatctaac cacctgtgtg tgtgcgtgtg tgtgtgtcga gtcgtgttgt
51 ccgcacattt gagtcgtgct gtccgcacat tttgttttat ctttgtacag
101 tgtgttagat ttcccgaggc atggctttcc aaggtaccag taggacttta
151 actcaacagt cctcagcggc tacgtctgac gatcttcaaa agatattatt
201 tagccctgaa gccattaaga agatggctac tgagtgtgac ctaggccggc
251 atcattggat gcgcgctgat aatgctattt cagtccggcc ccttgttccc
301 gaagtaaccc acggtcgtat tgcttccttc tttaaatctg gatatgatgt
351 tggtgaattg tgctcaaaag gatatatgag cgtccctcaa gtgttatgtg
401 ctgttactcg gacagtttcc actgatgctg aagggtcctt gagaatttac
451 ttagctgatc taggtgataa ggagttatct cctatagatg gacaatgcgt
501 ctcgttacac aaccatgatc ttcccgcttt ggtgtctttc caacctacgt
551 acgactgtcc tatggaaacc gttgggaacc gtaagcggtg ttttgctgtc
601 gttatcgaaa gacatggtta cattgggtat accggtacca cagctagcgt
651 gtgtagtaac tggcaagcaa ggttttcttc taagaataac aactacactc
701 atatcgcagc tgggaagact ctagtactgc ctttcaacag attagctgag
751 caaacaaaac cgtcagctgt tgctcgcctg ttgaagtcgc aattgaacaa
801 cattgaatct tcgcaatatc tgttaacgaa cgcgaagatt aatcaaaatg
851 cgcgcagtga gtccgaggaa ttaaatgttg agagccctcc cgccgcaatc
901 gggagttctt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa
951 cggtctttag cactttggtg cgtattagta tataagtatt tgtgagtctg
1001 tacacaatac tatatctata gtgtcctgtg tgagttgaaa cagtagacat
1051 ctgtgacgcg atgccgtgtt gagaagggaa cacatctggt tttagtaagc
1101 ctacatcaca gttttgaggt tcaattcctc ttactccctg ttgagcccct
1151 tactttctca tggatgcttc tccgcgagat tgcgttattg tctactgact
1201 atatagagag tgtgtgtgct gtgttttctc ttttgtgtcg tagaattgag
1251 tcgagtcatg gacaaatctg aatcaaccag tgctggtcgt aaccgtcgac
1301 gtcgtccgcg tcgtggttcc cgctccgccc cctcctcctc ggatgctaac
1351 tttagagtct tgtcgcagca gctttcgcga cttaacaaga cgttagcagc
1401 tggtcgtcca actattaacc acccaacctt tgtagggagt gagcgttgta
1451 aacctggata cacgttcaca tctattaccc taaagccacc aaaaatagac
1501 cgcgggtctt attatggtaa aaggttgcta ttacctgatt cagtcacgga
1551 atatgataag aaacttgttt cgcgcattca aattcgagtt aatcccttgc
1601 cgaaatttga ttctaccgtg tgggtgacag tccgtaaagt tcctgcctcc
1651 tcggacttat ccgttgccgc catctctgct atgtttgcgg acggagcctc
1701 accggtactg gtttatcagt atgctgcatc tggagttcaa gctaacaaca
1751 aattgttgta tgatctttcg gcgatgcgcg ctgatatagg cgacatgaga
1801 aagtacgccg tcctcgtgta ttcaaaagac gatgcgctcg agacggacga
1851 gctggtactt catgttgacg tcgagcacca acgcattccc acgtctgggg
1901 tgctcccagt ctgattccgt gttttccaga accctccctc cgatttctgt
1951 ggcgggagct gagttggcag ttctgctata aactgtctga ggtcactaaa
2001 cgttttacgg tgaacgggtt gtccatccag cttacggcta aaatggtcag
2051 tcgtggagaa atccacgcca gcagatttac aaatctctga ggcgcctttg
2101 aaaccatctc ctaggtttct tcggaaggac ttcggtccgt gtacttctag
2151 cacaacgtgc tagtttcagg gtacaggtgc ccccccactt tcgtgggggc
2201 ctccaaagga gacca