Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus genomic RNA, complete genome, strain: Chiba.
ACC No: AB250684
Dated: 2009-07-31 | Length: 4270 | CRC: 507759741
ID AB250684; SV 1; linear; genomic RNA; STD; VRL; 4270 BP.
XX
AC AB250684;
XX
DT 17-FEB-2007 (Rel. 90, Created)
DT 31-JUL-2009 (Rel. 101, Last updated, Version 3)
XX
DE Melon necrotic spot virus genomic RNA, complete genome, strain: Chiba.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4270
RA Tsuda S.;
RT ;
RL Submitted (16-FEB-2006) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shinya Tsuda National Agricultural Research Center, Dept. of Plant
RL Pathology; Kan-non dai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan
XX
RN [2]
RA Kido K., Tanaka C., Mochizuki T., Kubota K., Ohki T., Ohnishi J.,
RA Knight L.M., Tsuda S.;
RT "High Temperatures Activate Local Viral Multiplication and Cell-to-Cell
RT Movement of Melon necrotic spot virus but Restrict Expression of Systemic
RT Symptoms";
RL Phytopathology 98:181-186(2008).
XX
RN [3]
RA Mochizuki T., Hirai K., Kanda A., Ohnishi J., Ohki T., Tsuda S.;
RT "Induction of necrosis via mitochondrial targeting of Melon necrotic spot
RT virus replication protein p29 by its second transmembrane domain";
RL Virology 390:239-249(2009).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4270
FT /organism="Melon necrotic spot virus"
FT /strain="Chiba"
FT /mol_type="genomic RNA"
FT /country="Japan:Chiba"
FT /isolation_source="Melon"
FT /db_xref="taxon:11987"
FT CDS 90. .2465
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:894. .896,aa:OTHER)
FT /gene="p88"
FT /product="p88k-polymerase"
FT /note="readthrough product"
FT /db_xref="GOA:A2V6D2"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:A2V6D2"
FT /protein_id="BAF47084.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIVNSIITYGEEVVEQVKVDINE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVYLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS
FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND
FT KKELEPAPKPLSGVFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL
FT EGLSVQRKDAYLKTFVKAEKINTTRKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG
FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY
FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEVFEQIE
FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV
FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT
FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL"
FT CDS 90. .896
FT /codon_start=1
FT /transl_table=1
FT /gene="p28"
FT /product="p28k-polymerase"
FT /db_xref="UniProtKB/TrEMBL:A2V6D3"
FT /protein_id="BAF47085.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIVNSIITYGEEVVEQVKVDINE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVYLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN"
FT CDS 2444. .2641
FT /codon_start=1
FT /transl_table=1
FT /gene="p7"
FT /product="p7k"
FT /db_xref="GOA:Q006Z8"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:Q006Z8"
FT /protein_id="BAF47086.1"
FT /translation="MDPQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNF"
FT CDS 2645. .2830
FT /codon_start=1
FT /transl_table=1
FT /gene="p9"
FT /product="p9k"
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProtKB/TrEMBL:Q8UYH9"
FT /protein_id="BAF47087.1"
FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN
FT SSVKTQYVGISTNGDG"
FT CDS 2817. .3989
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="CP 38k"
FT /db_xref="GOA:A2V6D6"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:A2V6D6"
FT /protein_id="BAF47088.1"
FT /translation="MAMVKRINNLPTVKLAKQALPLLTNPKIVNKAIDVVPLVVQGGQK
FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI
FT ASVLPSNDLTVNNGDTNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRVTYIPTTGS
FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSSPWAENVLVVPCDNTWRYMNDTNAM
FT DRKLVDFGQFLFATYSGTGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGST
FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNVT
FT SSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA"
XX
SQ Sequence 4270 BP; 1073 A; 877 C; 1065 G; 1255 T; 0 other;
ab250684 Length: 4270 31-JUL-2009 Type: N Check: 4467 ..
1 gggattactc tagccgaatc cccgactttc ttggtttctg tgagttagtt
51 cgtatattgg ttgtctatct caatcaatac aggttagcaa tggatactgg
101 tttgaaattt cttgtttccg gaggtttagc cacctcatct gttattagga
151 aagtgagtgc tgtgagttca ttggattcgt cccttccttc atcgtctata
201 ctatctgcca ttcatgggtc ttggactagt gctatcagcc acgattgtag
251 caagattgcc aaggttgcca ccgtaattgg aattggttat cttggggttc
301 ggattggtgc cgcatggtgt cgtcgtaccc ccgggatagt gaactctata
351 attacatacg gggaagaagt ggttgagcaa gtaaaggtgg atattaatga
401 agatgctgaa gaggagtccg atactggtga ggaaattgtg gttggcacga
451 taggtattgg tatacacact aacgtcaacc ctgaagttcg agctaagcgt
501 agacatagat cgaggccatt cattaagaaa attgtgtatt taacgaaaaa
551 tcactttggt ggatgtcccg attcaagtaa atcgaacgtc atggctgtta
601 gcaaatttgt ttatgaacaa tgtaaacagc acaattgtct tccacatcag
651 acgagattga tcatgagtgt tgcagttcca ttggtgttaa gtcccgacat
701 gtacgacatt tccagtaaag ctctgttaaa cagcgagata ttaacagaaa
751 acagagccac actggaccgc ctcaaaactc ttgatgggtg gctgtcacat
801 ttagtgtgcc acccccttag cgcgaaggct tggaggcggg cgattgacaa
851 cttgtgtggt cttcctgact ggaaggcctt caagttggtc aactaggggt
901 gcctagagga actcgctggg ttctgtactt cggtacggag agggacgcac
951 ccagacatga ccgagtttcc tcaggatcgt cccattaaga cacgcaaact
1001 gtattgtttg gggggagttg gaaccagcgt gaagttcaat gtgcacaata
1051 actctctagc taaccttcgg cgcggtctca tagaacgtgt tttctttgtg
1101 gaaaatgata agaaggaact agagcctgcc cctaaacccc ttagtggtgt
1151 gtttgatcgc ttaacctggt ttcgtcggaa actccataat attgtgggta
1201 ctcattccag tattagtcca ggtcaattct tggatttcta tactggcagg
1251 aggcgtacaa tttatgaagg tgccgtgaag tcattggagg ggttaagtgt
1301 tcaaagaaag gatgcctatt tgaaaacgtt tgttaaggcg gagaagatta
1351 acaccactag gaagcctgac ccagctccgc gggtcataca accgaggaac
1401 gtaagatata atgttgaggt tggtcgttat ctacgtaggt ttgagcatta
1451 cctctatcga ggaattgatg aaatctggaa tggccccacg ataattaaag
1501 gatacactgt cgagcaaatt gggaaaatcg ctcgtgatgc ttgggactct
1551 ttcgtgagcc ccgtggcaat cgggtttgat atgaagaggt tcgaccaaca
1601 tgtatcctcc gacgctctta aatgggaaca tagtgtttat cttgatgctt
1651 tttgccatga ttcttatctt gcagaattgt tggagtggca attagtcaat
1701 aagggagtcg ggtatgccag tgatggaatg atcaaatata aggttgatgg
1751 gtgccgaatg agtggtgata tgaatacagc tatgggtaac tgtttgattg
1801 cctgtgccat cacacatgat ttcttccgta gtcgtggcat cagggcgcgt
1851 ttgatgaaca atggtgatga ctgtgtcgta atatgcgaaa aagaatgtgc
1901 cgcggtggtt aaagccgaca tggtaaggca ctggagacaa ttcgggtttc
1951 aatgtgagct cgaatgcgac gcagaagtct tcgagcaaat tgagttttgt
2001 caaatgcggc ctgtgtacga cggggaaaaa tatgtgatgg tgcggaatcc
2051 gttagttagt ctgtctaaag attcatactc agtcggccca tggaatggaa
2101 tcaaccatgc acgcaagtgg gttaatgctg ttggcttgtg tggcttatcc
2151 ctcactggtg gaattcctgt tgtccaaagt tactataata tgatgattcg
2201 taacactcag tccgtgaaca gttctggcat tcttcgggat gtcagttttg
2251 ctagtggatt tcgggagtta gcgcgattgg gtaacaggaa aagtggtgct
2301 atatcagaag acgcccgttt tagcttttat ctcgcatttg gcattactcc
2351 agatttacaa cgtgccatgg aaagtgacta tgatgctcat accatagagt
2401 ggggtttcgt gccccaggga aatcctagaa tacagccaat ctcatggacc
2451 ctcaacgaac tgtagaacaa actaatcctc ggggaagaag taaagaacgt
2501 ggtgacagcg ggggaaaaca gaagaactca atggggcgaa agatagccaa
2551 tgatgctatc tctgaatcga agcagggagt tatgggtgct agcacataca
2601 tcgctgataa aattaaggta actatcaact ttaattttta gtgtatggct
2651 tgttaccgtt gtgactccag ccccggggat tactctggag ctctgcttat
2701 attatttatc tcatttgttt tcttctatat tacctcgctt agcccgcaag
2751 gaaatactta cgttcaccac ttcgataatt cttccgttaa gacgcaatac
2801 gttggcatct ctacaaatgg cgatggttaa acgcattaat aatttaccaa
2851 cagtgaagct tgctaagcag gccctgcccc tgctaacgaa tcctaaaatt
2901 gtgaataagg ccatagatgt ggttcctttg gtcgtccagg gtggtcagaa
2951 attgtccaaa gctgccaagc ggttgcttgg cgcttatggt ggtaacattt
3001 cttacactga gggcgctaag cctggtgcta tatccgctcc agttgccatt
3051 agtaggcgag tggcggggat gaagcctagg tttgttcgat ccgaaggatc
3101 tgtgaagata gttcataggg agtttattgc ctctgttctt ccgtcgaatg
3151 atctcaccgt gaacaatggt gataccaata tcggtaagta tagggtcaat
3201 cccagtaata acgctttatt cacatggctt cagggacaag cgcaattata
3251 tgatatgtac agatttactc gacttcgagt tacctatatt ccaactaccg
3301 gatccacttc cacaggtcgt gtttctatcc tttgggatag agactctcag
3351 gatcccctcc ctattgatcg cgccgctatt agttcttatg ctcattacgc
3401 agactcatcg ccttgggcag agaacgtttt agtggttccg tgtgacaata
3451 cgtggaggta tatgaatgat actaatgcaa tggatcggaa gttggttgat
3501 tttgggcagt ttctctttgc tacttattct ggtactggtg ccaccgccca
3551 tggtgatctc tacgttgagt acgctgttga attcaaagat ccccagccga
3601 ttgctggaat ggtgtgtatg tttgatcgct tggtctcttt ctctgaagtc
3651 ggatctacaa ttaaaggagt caattatatt gctgatcgtg acgtgataac
3701 tacggggggt aatattggtg tcaacatcaa tattcccggg acttatctcg
3751 tcacgattgt tcttaatgcc acatcaattg gccccctcac cttcactggt
3801 aattctaaac tcgtaggcaa tagtcttaac gttaccagca gtggtgcttc
3851 tgctctcaca tttaccctta actccactgg tgtgcccaac agttccaatt
3901 cttcattctc tgtgggcact gttgttgcat tgactagggt ccgtatgacg
3951 atcactcgct gctctcctga aactgcctac ctcgcctaaa atttaattta
4001 ctatactcca aatctggtct ctctcatacc ttcctgttct cagccagatc
4051 tctgttctgg tgtcctatag gtgtccttgt cgtgtgtagt gcggtctggc
4101 taaccgtaac ggcgtatcgg cttggttctc cgacgattag gctccgggat
4151 gtacgacata gttgaagatg gatggtgttt ggtagatcac cgctagcaaa
4201 atacactctg tgtggggcgt gctagtggat agtcatgtat gtttgagatg
4251 ggttataggc ccatcccgcc