Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus genomic RNA, complete genome, strain: Kochi.
ACC No: AB250685
Dated: 2009-07-31 | Length: 4271 | CRC: 1486996435
ID AB250685; SV 1; linear; genomic RNA; STD; VRL; 4271 BP.
XX
AC AB250685;
XX
DT 17-FEB-2007 (Rel. 90, Created)
DT 31-JUL-2009 (Rel. 101, Last updated, Version 3)
XX
DE Melon necrotic spot virus genomic RNA, complete genome, strain: Kochi.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4271
RA Tsuda S.;
RT ;
RL Submitted (16-FEB-2006) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shinya Tsuda National Agricultural Research Center, Dept. of Plant
RL Pathology; Kan-non dai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan
XX
RN [2]
RA Kido K., Tanaka C., Mochizuki T., Kubota K., Ohki T., Ohnishi J.,
RA Knight L.M., Tsuda S.;
RT "High Temperatures Activate Local Viral Multiplication and Cell-to-Cell
RT Movement of Melon necrotic spot virus but Restrict Expression of Systemic
RT Symptoms";
RL Phytopathology 98:181-186(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4271
FT /organism="Melon necrotic spot virus"
FT /strain="Kochi"
FT /mol_type="genomic RNA"
FT /country="Japan:Kochi"
FT /isolation_source="Melon"
FT /db_xref="taxon:11987"
FT CDS 90. .2465
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:894. .896,aa:OTHER)
FT /gene="p88"
FT /product="p88k-polymerase"
FT /note="readthrough product"
FT /db_xref="GOA:A2V6D7"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:A2V6D7"
FT /protein_id="BAF47089.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIANSIITYGEEVVEQVKVDIDE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS
FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND
FT KKELEPAPKPLSGVFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL
FT EGLSVQRRDAYLKTFVKAEKINTTRKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG
FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY
FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEVFEQIE
FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV
FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT
FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL"
FT CDS 90. .896
FT /codon_start=1
FT /transl_table=1
FT /gene="p28"
FT /product="p28k-polymerase"
FT /db_xref="UniProtKB/TrEMBL:A2V6D8"
FT /protein_id="BAF47090.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIANSIITYGEEVVEQVKVDIDE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN"
FT CDS 2444. .2641
FT /codon_start=1
FT /transl_table=1
FT /gene="p7"
FT /product="p7k"
FT /db_xref="GOA:A2V6D9"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:A2V6D9"
FT /protein_id="BAF47091.1"
FT /translation="MDSQRAVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNF"
FT CDS 2645. .2830
FT /codon_start=1
FT /transl_table=1
FT /gene="p9"
FT /product="p9k"
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProtKB/TrEMBL:Q8UYH9"
FT /protein_id="BAF47092.1"
FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN
FT SSVKTQYVGISTNGDG"
FT CDS 2817. .3989
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="CP 38k"
FT /db_xref="GOA:A2V6E1"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:A2V6E1"
FT /protein_id="BAF47093.1"
FT /translation="MAMVKRINNLPTVKLAKQALPLLTNPKIVNKAIDVVPLVVQGGQK
FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI
FT ASVLPSNDLTVNNGDANIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGS
FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAEDVLVVPCDNTWRYMNDTNAV
FT DRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRSVSFSEVGST
FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVT
FT SSGVSALTFTLNSTGVPNSTNSSFSVGTVVALTRVRMTITRCSPETAYLA"
XX
SQ Sequence 4271 BP; 1064 A; 889 C; 1077 G; 1241 T; 0 other;
ab250685 Length: 4271 31-JUL-2009 Type: N Check: 5363 ..
1 gggattactc tagccggatc cccgactttc ttggtttttg tgagttagtt
51 cgtatattgg ttatctatct tagtcaatac aggttagcaa tggatactgg
101 tttgaaattt cttgtttccg gaggtttagc cacctcatct gttattagga
151 aagtgagtgc tgtgagttcc ttggattcgt cccttccttc atcgtctata
201 ctatctgcca ttcatgggtc ttggactagt gctatcagcc acgattgtag
251 caagattgcc aaggttgcca ccgtgattgg aattggttat ctcggggttc
301 ggattggtgc cgcatggtgt cgtcgtaccc ccgggatagc gaattctata
351 attacatatg gggaagaagt ggttgagcaa gtaaaggtgg atattgatga
401 agatgctgaa gaggagtccg atactggtga ggaaattgtg gttggcacga
451 taggtattgg tatacacaca aatgtcaacc ctgaagttcg agctaagcgc
501 agacatagat cgaggccatt tattaagaag attgtgaatt taacgaaaaa
551 tcactttggt ggatgccccg attcaagcaa atcgaacgtc atggctgtta
601 gcaaatttgt ttatgaacaa tgtaaacagc ataattgtct tccacatcag
651 acgagattga tcatgagtgt tgcagttcca ttggtgttaa gtcccgacat
701 gtacgacatt tctagtaaag ctctgttgaa cagcgagata ttaacagaaa
751 acagagctac actggaccgc ctcaaaactc ttgacgggtg gctgtcacat
801 ttggtgtgcc acccccttag cgcgaaggct tggaggcggg cgattgataa
851 cttgtgtggc cttcctgatt ggaaggcctt caagttggtc aactaggggt
901 gcctagagga actcgctggg ttctgtactt cggtacggag ggggacgcac
951 ccagacatga ccgagtttcc tcaggatcgt cccattaaga cacgcaaact
1001 gtattgtttg gggggagttg gaactagcgt gaagttcaat gtacacaata
1051 actctctagc taaccttcgg cgcggtctta tagaacgcgt tttctttgtt
1101 gaaaatgata agaaggaact agagcctgcc cctaaacccc ttagtggtgt
1151 gtttgaccgc ttaacctggt ttcgtcggaa actccataac attgtgggta
1201 ctcattccag tattagtccg ggtcaattct tggatttcta tactggcagg
1251 aggcgtacaa tttatgaagg tgccgtgaag tcattggagg ggttaagtgt
1301 tcaaagaagg gatgcctatt tgaaaacgtt tgttaaggcg gagaagatta
1351 acaccactag gaagcctgac ccagctccgc gggtcataca accgaggaac
1401 gtaagatata atgttgaggt tggtcgttat ctacgtaggt ttgagcatta
1451 cctctatcga ggaattgatg aaatctggaa tggccccaca ataattaaag
1501 gatacactgt cgagcaaatt gggaaaatcg ctcgtgatgc ttgggactct
1551 ttcgtaagcc ccgtggcaat cgggtttgat atgaagaggt tcgaccaaca
1601 tgtatcctcc gacgctctta aatgggaaca tagtgtgtat cttgatgctt
1651 tttgccatga ttcttatctt gcagaattgt tggagtggca attagtcaat
1701 aagggggtcg gatatgccag tgatggaatg atcaaatata aggttgatgg
1751 gtgccggatg agtggtgaca tgaatacagc tatgggcaac tgtctgattg
1801 cctgcgctat cacacatgat ttcttccgaa gtcgtggcat cagggcgcgt
1851 ttgatgaaca atggtgatga ctgtgtcgta atatgtgaaa aagaatgtgc
1901 cgcggtggtt aaagccgaca tggtaaggca ctggagacaa ttcgggtttc
1951 aatgtgagct cgaatgcgac gcagaagtct tcgagcaaat tgagttttgt
2001 caaatgcggc ctgtgtacga cggggaaaag tatgtgatgg tgcggaatcc
2051 gttggttagc ctgtctaaag attcatactc agtcggccca tggaacggaa
2101 tcaaccatgc acgcaagtgg gttaacgctg taggcttgtg tggcttatcc
2151 ctcactggtg gaattcctgt tgtccaaagt tactataaca tgatgattcg
2201 taacactcaa tccgtgaaca gttctggcat tcttcgagat gttagttttg
2251 ctagtggatt tcgggagtta gcgcgattgg gtaacaggaa aagtggtgcc
2301 atatcagaag acgcccgttt tagcttttat ctcgcatttg gcattactcc
2351 agatttacaa cgtgccatgg aaagtgacta tgatgctcat accatagagt
2401 ggggtttcgt gccccaggga aatcctagaa tacagccaat ctcatggact
2451 ctcaacgagc tgtagaacaa actaatcctc ggggaaggag taaagaacgt
2501 ggtgacagcg ggggaaaaca gaagaactca atggggcgaa agatagccaa
2551 tgatgctatc tctgaatcga agcagggagt tatgggtgct agcacataca
2601 tcgctgataa aatcaaggtg actataaact ttaattttta gtgtatggct
2651 tgttatcgtt gtgactccag ccccggggat tactctggag ctctgcttat
2701 attatttatc tcatttgttt tcttctatat tacctcgctt agcccgcaag
2751 gaaatactta cgttcaccac ttcgataatt cttccgttaa aacgcaatac
2801 gttggcatct ctacaaatgg cgatggttaa acgcattaat aatttaccga
2851 cagtgaagct tgctaagcag gccctgcccc tgctaacgaa tcctaaaatt
2901 gtgaataagg ctatagatgt ggttcctttg gtcgtccaag gtggtcagaa
2951 attgtccaaa gctgccaagc ggttgcttgg tgcttatggt ggtaacattt
3001 cttatactga gggcgctaag cctggtgcta tatccgcccc agttgccatt
3051 agtaggcgag tggcgggtat gaagcctagg tttgttcgat ccgaaggatc
3101 tgtgaagata gttcataggg agtttattgc ctctgttctt ccgtcgaatg
3151 atctcaccgt gaataacggt gatgccaata tcggtaagta tagggtcaat
3201 cccagtaata acgctttatt cacatggctt cagggacaag cgcaattgta
3251 tgatatgtac agatttactc ggcttcgatt tacctatatt ccaaccaccg
3301 gatccacttc cacaggtcgt gtctctattc tctgggatag agactctcag
3351 gatcccctcc ctattgaccg cgccgccatt agttcttatg cgcattacgc
3401 tgattcagcg ccttgggcag aggacgtttt agtggttccg tgtgacaaca
3451 cgtggaggta tatgaatgac accaatgctg tggaccggaa gttggttgat
3501 tttgggcagt tcctctttgc tacttattct ggtgctggtg ccaccgccca
3551 cggtgatctc tacgttgagt acgctgttga attcaaagat ccccagccta
3601 ttgctggaat ggtctgtatg tttgatcgct cggtctcttt ctctgaagtc
3651 ggatctacaa ttaaaggagt caattacatt gctgaccgtg atgtgataac
3701 cactggaggc aatattggtg ttaatatcaa tattccaggg acttatctcg
3751 tcacgattgt acttaacgcc acttcaattg gctcccttac cttcactggc
3801 aattctaaac tcgtaggcaa tagtcttaac gttactagca gcggcgtttc
3851 agctcttaca ttcaccctta attccactgg tgtgcccaac agtaccaatt
3901 cttctttctc tgtgggcact gtcgttgcat tgactagggt tcgtatgacg
3951 attactcgct gctctcctga aactgcctac ctcgcctaaa attacattta
4001 ctatactccg aaatctggtc tcccttatac ctacctgttc tcagccagat
4051 ctctgttctg gtgtcctata ggtgtccttg tcgtgtgtag tgcggtctgg
4101 ctaaccgtaa cggcgtatcg gctcggttct ccgacgatta ggctctggga
4151 tgtacgacat agctgaagat ggatggtgtt cggtagatca ccgctagcaa
4201 aatacactct gtgtggggcg tgctagtgga tagtcatgta tgtttgagat
4251 gggttatagg cccatcccgc c