Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus genomic RNA, complete genome, strain: Nagasaki.
ACC No: AB250686
Dated: 2009-07-31 | Length: 4271 | CRC: -1871109529
ID AB250686; SV 1; linear; genomic RNA; STD; VRL; 4271 BP.
XX
AC AB250686;
XX
DT 17-FEB-2007 (Rel. 90, Created)
DT 31-JUL-2009 (Rel. 101, Last updated, Version 3)
XX
DE Melon necrotic spot virus genomic RNA, complete genome, strain: Nagasaki.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4271
RA Tsuda S.;
RT ;
RL Submitted (16-FEB-2006) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shinya Tsuda National Agricultural Research Center, Dept. of Plant
RL Pathology; Kan-non dai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan
XX
RN [2]
RA Kido K., Tanaka C., Mochizuki T., Kubota K., Ohki T., Ohnishi J.,
RA Knight L.M., Tsuda S.;
RT "High Temperatures Activate Local Viral Multiplication and Cell-to-Cell
RT Movement of Melon necrotic spot virus but Restrict Expression of Systemic
RT Symptoms";
RL Phytopathology 98:181-186(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4271
FT /organism="Melon necrotic spot virus"
FT /strain="Nagasaki"
FT /mol_type="genomic RNA"
FT /country="Japan:Nagasaki"
FT /isolation_source="Melon"
FT /db_xref="taxon:11987"
FT CDS 90. .2465
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:894. .896,aa:OTHER)
FT /gene="p88"
FT /product="p88k-polymerase"
FT /note="readthrough product"
FT /db_xref="GOA:A2V6E2"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:A2V6E2"
FT /protein_id="BAF47094.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRAPGITNSIITYGEEVVEQVKVDIDE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS
FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND
FT KKELEPAPKPLSGVFDRLTWFRRKLHNIVGTHSSISPGKFLDFYTGRRRTIYEGAVKSL
FT EGLSVQRKDAYLKTFVKAEKINTTKKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG
FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY
FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEVFEQIE
FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGVNHARKWVNAVGLCGLSLTGGIPV
FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT
FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL"
FT CDS 90. .896
FT /codon_start=1
FT /transl_table=1
FT /gene="p28"
FT /product="p28k-polymerase"
FT /db_xref="UniProtKB/TrEMBL:A2V6E3"
FT /protein_id="BAF47095.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRAPGITNSIITYGEEVVEQVKVDIDE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN"
FT CDS 2444. .2641
FT /codon_start=1
FT /transl_table=1
FT /gene="p7"
FT /product="p7k"
FT /db_xref="GOA:Q8V993"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:Q8V993"
FT /protein_id="BAF47096.1"
FT /translation="MDSQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNF"
FT CDS 2645. .2830
FT /codon_start=1
FT /transl_table=1
FT /gene="p9"
FT /product="p9k"
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProtKB/TrEMBL:Q8UYH9"
FT /protein_id="BAF47097.1"
FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN
FT SSVKTQYVGISTNGDG"
FT CDS 2817. .3989
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="CP 38k"
FT /db_xref="GOA:A2V6E6"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:A2V6E6"
FT /protein_id="BAF47098.1"
FT /translation="MAMVKRINNLPTVKLTKQALPLLTNPKIVNKAIDVVPLVVQGGQK
FT LSKAAKRLLGAYGGNISYTEGARPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI
FT ASVLPSNDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGS
FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSTPWAENVLVVPCDNTWRYMNDTSAV
FT DRKLVDFGQFLFATYSGAGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGST
FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVT
FT SSGASALTFTLNSTGVPNSTNSSFSVGTVVALTRVRMTITRCSPETAYLA"
XX
SQ Sequence 4271 BP; 1080 A; 886 C; 1063 G; 1242 T; 0 other;
ab250686 Length: 4271 31-JUL-2009 Type: N Check: 4442 ..
1 gggattactc tagccgaatc cccgactttc ttggtttttg tgagttagtt
51 cgtatattgg ttatctctct taatcaatac aggttagcaa tggatactgg
101 tttgaaattt cttgtttctg gaggtttagc cacctcatct gttattagga
151 aagtgagtgc tgtgagttca ttggattcgt cccttccttc atcgtctata
201 ctatctgcca ttcatgggtc ttggactagt gctatcagcc acgattgtag
251 caagattgcc aaggttgcca ccgtgattgg aattggttat cttggggttc
301 gaattggtgc cgcatggtgt cgtcgtgccc ccggaataac gaattctata
351 attacatacg gggaagaagt ggttgagcaa gtaaaggtgg atattgatga
401 agatgctgaa gaggagtccg atactggtga ggaaattgtg gttggcacga
451 taggtattgg tatacacact aacgtcaacc ctgaggttcg agctaagcgc
501 agacatagat cgaggccatt cattaagaag attgtgaatt taacgaaaaa
551 tcactttggt ggatgccccg attcaagtaa atcgaacgtc atggctgtta
601 gcaagtttgt ttatgaacaa tgtaaacagc acaattgtct tccacatcag
651 acgagattga tcatgagtgt tgcagttcca ttggtgttaa gtcccgacat
701 gtacgatatt tccagtaaag ctctgttaaa cagcgagata ttgacagaaa
751 acagagctac actggaccgc ctcaaaactc ttgacgggtg gctgtcacat
801 ttagtgtgcc acccccttag cgcgaaggct tggaggcggg cgattgacaa
851 cttatgtggt cttcctgact ggaaggcctt caagttggtc aactaggggt
901 gcctagagga actcgctggg ttctgtactt cggtacggag ggggacgcac
951 ccagacatga ccgagtttcc tcaggatcgt cccattaaga cacgcaaact
1001 gtattgtttg gggggagttg gaactagcgt gaagttcaat gtacacaaca
1051 actctctagc taaccttcgg cgcggtctta tagaacgcgt tttctttgtt
1101 gaaaatgata agaaggaact agagcctgcc cctaaacccc ttagtggtgt
1151 gtttgaccgc ttaacctggt ttcgtcggaa actccataac attgtgggta
1201 ctcattccag tattagtcca ggtaaattct tggatttcta tactggcagg
1251 aggcgtacaa tctatgaggg tgccgtgaag tcattggagg ggttaagtgt
1301 tcaaagaaag gatgcctatt tgaaaacgtt tgttaaggcg gagaagatta
1351 acaccactaa gaagcctgac ccagctccgc gggtcataca accgaggaac
1401 gtaagatata atgttgaggt tggtcgttat ctacgtaggt ttgagcatta
1451 cctctatcga ggaattgatg aaatctggaa tggccccact ataattaaag
1501 gatacactgt cgagcaaatt gggaaaatcg ctcgtgatgc ttgggactct
1551 ttcgtgagcc ccgtggcaat cgggtttgat atgaagaggt tcgaccaaca
1601 tgtatcctcc gacgctctta aatgggaaca cagtgtttat cttgatgctt
1651 tttgccatga ttcttatctt gcagaattgt tggagtggca attagtcaat
1701 aaaggagtcg ggtatgccag tgacggaatg atcaaatata aggttgatgg
1751 gtgccggatg agtggtgaca tgaatacagc tatgggcaac tgtctgattg
1801 cctgtgctat cacacatgat ttcttccgta gtcgtggtat cagggcgcgt
1851 ttgatgaaca atggtgatga ctgtgtcgta atatgtgaaa aagaatgtgc
1901 cgcggtggtt aaagccgaca tggtaaggca ctggagacaa ttcgggtttc
1951 aatgcgagct cgaatgcgac gcagaagtct tcgagcaaat tgagttttgt
2001 caaatgcgac ctgtgtacga cggggaaaaa tatgtgatgg tgcggaatcc
2051 gctagttagc ctgtctaaag attcatactc agtcggccca tggaatggag
2101 tcaaccatgc acgcaagtgg gtaaatgccg taggcttgtg tggcttatcc
2151 ctcactggtg gaattcctgt tgtccagagt tactataata tgatgattcg
2201 taatactcaa tccgtgaaca gttctggcat tctccgggat gtcagttttg
2251 ctagtggatt tcgggagtta gcgcgattgg gtaacaggaa aagtggtgcc
2301 atatcagaag acgcccgttt tagcttttat ctcgcatttg gcattactcc
2351 agatttacaa cgtgccatgg aaagtgacta tgatgctcat accatagagt
2401 ggggtttcgt gccccaggga aatcctagaa tacagccaat ctcatggact
2451 ctcaacgaac tgtagaacaa actaatcctc ggggaagaag taaagaacgt
2501 ggtgacagcg ggggaaaaca gaagaactca atggggcgaa agatagccaa
2551 tgatgctatc tctgaatcga agcagggagt tatgggtgct agcacatata
2601 ttgctgataa aattaaggtg actatcaact ttaattttta gtgtatggct
2651 tgttaccgtt gtgactccag ccccggggat tactctggag ctttgcttat
2701 attatttatc tcatttgttt tcttctatat tacctcgctt agcccgcaag
2751 gaaatactta cgttcaccac ttcgataatt cttccgttaa aacgcaatac
2801 gttggcatct ctacaaatgg cgatggttaa acgcattaat aatttaccaa
2851 cagtgaagct tactaagcag gccctgcccc tgttaacgaa tcctaaaatt
2901 gtgaataagg ctatagatgt ggttcctttg gtcgtccaag gtggtcagaa
2951 attgtccaaa gctgccaagc ggctgcttgg cgcttatggt ggtaacattt
3001 cttacactga gggtgctaga cctggtgcaa tatccgctcc agttgccatt
3051 agtaggcgag tggcgggtat gaagcctagg tttgttcgat ccgaaggatc
3101 agtgaagata gttcataggg agtttattgc ctctgttctt ccgtcaaatg
3151 atctcaccgt gaataatggt gatgtcaata tcggtaagta tagggtcaat
3201 cccagtaata acgctttatt cacatggctt cagggacaag cgcaattata
3251 tgatatgtac agatttactc gactacgatt tacctatatt ccaaccaccg
3301 gatccacttc tacaggtcgt gtttctattc tttgggatag agactctcag
3351 gatcccctcc ctattgaccg cgccgctatt agttcttatg ctcattacgc
3401 tgattcaacg ccttgggcag agaacgtttt agtggttccg tgtgacaata
3451 cgtggaggta catgaatgat accagcgcag tggaccggaa gttggttgat
3501 tttgggcagt tcctctttgc tacctattct ggtgctggtg ccaccgccca
3551 cggtgatctc tacgttgagt atgctgtgga attcaaagat ccccagccta
3601 ttgctggaat ggtttgtatg tttgatcgct tggtctcttt ctctgaagtc
3651 ggatccacaa ttaaaggagt caattatatt gctgatcgtg atgtgataac
3701 cactgggggc aatattggtg tcaacatcaa tattcccggg acttacctcg
3751 ttacgattgt tcttaacgct acatcaattg gctccctcac cttcactggt
3801 aattctaaac tcgtaggcaa tagtcttaac gttaccagca gtggcgcttc
3851 agctcttaca ttcaccctta attccactgg tgtgcccaac agtactaatt
3901 cttcattctc tgtgggcacc gttgttgcat tgaccagggt tcgtatgacg
3951 attactcgct gctctcctga aactgcctac ctcgcctaag aattaattta
4001 ctatactcca aaatctggtc tcccctatac ctacctgttc tcagccagat
4051 ctctgttctg gtgtcctata ggtgtccttg tcgtgtgtag tgcggtctgg
4101 ctaaccgtaa cggcgtatcg gctcggttct ccgatgatta ggctccggga
4151 tgcacgacat agctgaagat ggatggtgtt cggtagatca ccgctagcaa
4201 aatacactct gtgtggggcg tgctagtgga tagtcatgta tgtttgagat
4251 gggttatagg cccatcccgc c