Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, P1 protein region, partial cds, isolate: NID047J.

ACC No: AB267286

Dated: 2007-07-04 | Length: 1086 | CRC: 921991077

                
ID   AB267286; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB267286;
XX
DT   04-JUL-2007 (Rel. 92, Created)
DT   04-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Turnip mosaic virus gene for polyprotein, P1 protein region, partial cds,
DE   isolate: NID047J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (28-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Yamashita T., Ohshima K.;
RT   "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT   central Honshu, Japan";
RL   J. Gen. Plant Pathol. 73:197-208(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NID047J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="BAF68894.1"
FT                   /translation="MAAVTFAPAITNATANGPASTGMVQFGNFPPVPLRTTVATLVATP
FT                   VAQPKLYTVQFGSLDPVVVKGEAGSSAKATRQQPSVETDASLREAAALEVAKPKPNAVL
FT                   RMHEEANKERALFLDWETSLKRQSYGIAEHEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPQMNQFSIGGGPAANVIEAEEIRTKWPLHKTPSMKKKMVFKACRMNN
FT                   QGIDMLMRSLIKIFKAKNATIEYTAKKSINIDFVKKERTKFARVQVAHMLGKRAQRDLL
FT                   TGAEENHFIDTVSGYSGNKRAINPGVVCAGWSGVIVRNGALNQNQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKTMSHKIVHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 344 A; 243 C; 286 G; 213 T; 0 other;

ab267286 Length: 1086  04-JUL-2007  Type: N  Check: 7346  ..

       1  atggcagcag taacattcgc accagcaatc accaacgcca ccgccaacgg
      51  accagcatcc accggaatgg tgcagtttgg gaacttccca ccagtaccat
     101  tgcgaaccac cgtcgcaacc ttagtcgcca ctccagtggc gcaacccaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagttg tcaagggcga
     201  agcagggtct tctgctaagg caacccgcca gcagcctagc gttgaaacag
     251  acgctagcct cagggaagcc gcagctttag aggttgcaaa gcccaagcca
     301  aatgccgtgt taagaatgca cgaagaagca aataaagagc gagcgctctt
     351  tttggattgg gaaactagtt tgaaaaggca atcgtatggt atcgccgaac
     401  atgagaaagt cgtaatgaca actcgtggcg ttagcaagat agtgcccagg
     451  agttcacggg caatgaagca aaagcgcgca agagaaaggc gtagagcaca
     501  acagccaatc gtgctgaaat gggagccaca gatgaaccag ttctctattg
     551  gaggaggacc tgccgcaaat gtaattgagg cagaggaaat tcgcacgaag
     601  tggccgttac acaagacacc atcaatgaag aaaaagatgg tgttcaaggc
     651  atgcagaatg aacaatcaag gaatcgacat gctgatgcgt tccttgatta
     701  agattttcaa ggcaaagaat gctactattg agtacaccgc gaagaagtct
     751  atcaatatag actttgttaa aaaggagcga acaaagttcg ccagagttca
     801  ggtggcacat atgcttggca aacgagcaca acgtgacctg ttaactggag
     851  cggaagaaaa ccactttatt gacactgtca gtggttactc aggcaacaag
     901  agagccataa acccaggagt agtgtgtgcc ggttggagcg gagttattgt
     951  taggaacgga gctctcaacc agaatcagag taggagtcca tcacaggctt
    1001  tcgtgatcag aggcgaacat gaaggcaaat tgtatgatgc cagggttaag
    1051  gtcacgaaga ctatgagcca taagattgtg cattat