Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, P1 protein region, partial cds, isolate: TYD084J.

ACC No: AB267308

Dated: 2007-07-04 | Length: 1086 | CRC: -920068391

                
ID   AB267308; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB267308;
XX
DT   04-JUL-2007 (Rel. 92, Created)
DT   04-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Turnip mosaic virus gene for polyprotein, P1 protein region, partial cds,
DE   isolate: TYD084J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (28-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Yamashita T., Ohshima K.;
RT   "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT   central Honshu, Japan";
RL   J. Gen. Plant Pathol. 73:197-208(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="TYD084J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="BAF68916.1"
FT                   /translation="MAAVTFAPAITNAITNKPASTGMVQFGNFPPVPLRTTIATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGPGSSAKATRQQLSIAPDATLREAAALEVAKPKPNAVL
FT                   RMHEEANKERALFLDWETSLKRQSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPQLSTFSIGGGPAANVIEAEEVRTKWPLHKTPSMKKKTVFKACRMSN
FT                   QGIDMLMRSLIKIFKAKNATIEYTAKKSINIDFVRKERTKFARIQVAHMLGRRAQRDLL
FT                   AGAEENHFIDTLSGYSGNKRVISPGVVCAGWSGIIIRDGVLTQSQSRSPSQSFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIVHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 336 A; 260 C; 287 G; 203 T; 0 other;

ab267308 Length: 1086  04-JUL-2007  Type: N  Check: 5115  ..

       1  atggcagcag ttacattcgc accagcaatc accaacgcca tcaccaacaa
      51  accagcatcc accggaatgg tacaatttgg gaacttccca ccagtaccat
     101  tgcgaaccac catcgctacc acagtcgcca ccccagtggc gcaacctaaa
     151  ctgtacacag tacagtttgg aagtcttgac ccagtagtcg tcaagggtgg
     201  accagggtcc tctgctaagg caacccgcca gcagcttagc atcgcaccag
     251  atgctaccct cagggaagcc gcagctttgg aggttgcgaa acccaagccg
     301  aatgccgtgt tgagaatgca cgaggaggca aacaaagagc gagcgctctt
     351  cttggactgg gaaaccagtt tgaaaaggca atcgtatggc attgctgaga
     401  acgagaaagt cgtgatgaca actcgtggtg tcagcaagat agtgcccaga
     451  agttcacggg cgatgaagca aaagcgcgcg agggagaggc gcagggcaca
     501  acaaccgatt gtgctaaaat gggagccaca acttagcaca ttctctattg
     551  gaggagggcc tgccgcaaat gtaattgagg cagaggaagt gcgcacaaag
     601  tggccactac acaaaacacc gtcaatgaag aaaaagacgg tgttcaaggc
     651  gtgcagaatg agcaaccaag gaattgacat gctaatgcgt tccttgatca
     701  agatcttcaa ggcgaagaac gccaccattg aatacactgc gaagaagtct
     751  atcaacatag actttgttag gaaggagcga acaaagttcg ccagaatcca
     801  ggtggcacat atgcttggta gaagagcgca acgtgacctg ttagctggag
     851  cggaggagaa tcactttatc gacactctca gtggttactc aggtaataag
     901  agagtcataa gcccaggagt ggtttgtgct ggctggagtg gaataatcat
     951  tagagacgga gttctcactc aaagtcaaag caggagtccg tcacaatcct
    1001  ttgtgatcag aggcgaacac gaaggcaaat tgtacgatgc cagagtcaaa
    1051  gtcacgaagg tcatgagtca caaaatcgtg cactac