Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: ISD091J.
ACC No: AB267315
Dated: 2007-07-04 | Length: 1527 | CRC: 1343149742
ID AB267315; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC AB267315;
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DT 04-JUL-2007 (Rel. 92, Created)
DT 04-JUL-2007 (Rel. 92, Last updated, Version 1)
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DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: ISD091J.
XX
KW .
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (28-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomitaka Y., Yamashita T., Ohshima K.;
RT "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT central Honshu, Japan";
RL J. Gen. Plant Pathol. 73:197-208(2007).
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FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /organism="Turnip mosaic virus"
FT /isolate="ISD091J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12230"
FT CDS <1. .>1527
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="BAF68923.1"
FT /translation="TDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT LVICGVFGGGIWMIIQHLRSKLSEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT TDISLVQKHFGDIRMDLLGEDELEPNELRMHKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT CDLHATIAGFPEREHELRQTGKAQPIDISEIPKANTELVPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLC
FT TIETHEWVKHWRYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
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SQ Sequence 1527 BP; 490 A; 340 C; 352 G; 345 T; 0 other;
ab267315 Length: 1527 04-JUL-2007 Type: N Check: 3677 ..
1 actgacggaa tatcccgtca tttcatgagt gagtatggag cactcgaggc
51 agttcaccac cagaacacca atgacatgag caaattccta aagctcaagg
101 gcaaatggaa taaaacgtta atcacacgag acgtgttggt gatctgtgga
151 gtttttggag gcggaatctg gatgataatc caacacctgc gttcaaaact
201 ttctgaacct gtgacccatg aagcaaaagg caagaggcaa aggcagaaac
251 taaagtttcg caacgcccga gacaacaaga tgggtagaga ggtatacgga
301 gatgacgacg tcatagaaca cttcttcgga gatgcctata cgaagaaggg
351 aaagagcaaa ggcagaacac gtggcctcgg tcataaaaac aggaaattca
401 tcaacatgta tggattcgat cctgaagact tctcagcagt caggtttgtg
451 gatccactca cgggagccac attagatgat aatccgttca cggacatctc
501 ccttgtgcaa aaacactttg gagacattcg aatggatctg cttggagaag
551 acgaactgga accaaatgag ttgcgtatgc acaagacaat tcaggcctac
601 tacatgaaca ataaaacagg taaggctctg aaagtggatt tgacaccaca
651 cgtaccactt aaggtgtgcg atcttcacgc aaccattgct ggtttcccgg
701 aacgagaaca cgaactcagg caaactggta aagctcagcc tatagatata
751 agcgaaatac ccaaggctaa tactgagcta gtcccagttg accacgaaag
801 tagctccatg ttcagaggat tgcgcgatta caacccgata tctaataaca
851 tctgtcactt aacaaatgta tcggacggag catcaaactc gttatatggt
901 gttggttttg ggccactcat attaacgaac cggcatcttt tcgaacggaa
951 taacggtgag ctagtgatta aatctagaca tggtgagttt gtgattaaaa
1001 acacgactca actccattta ctaccgattc cggatcgaga cttgctgcta
1051 atccgactac cgaaagacat cccacctttc ccgcaaaaat taggctttag
1101 acaacctgag aagggtgaga ggatctgtat ggtgggatcc aacttccaaa
1151 ctaagagcat tactagtgtg gtctctgaga ctagcacaat tatgccagtg
1201 gagaacagcc agttttggaa gcattggatt agcactaaag atggccaatg
1251 tgggagccca atggtgagca caaaggacgg aaagatactt ggcctacata
1301 gcctagcgaa tttccaaaat tccatcaact attttgctgc cttcccggat
1351 gattttgccg agaaatatct ttgcaccatc gaaacacatg agtgggtcaa
1401 acactggagg tacaacacca gtgcgattag ttggggctcc ttaaacatac
1451 aagcttcgca accagcaggc ttgttcaaag tgagcaaact catatcagac
1501 cttgacagca cagcagtgta cgcacaa