Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: SHD94J.
ACC No: AB267331
Dated: 2007-07-04 | Length: 1527 | CRC: -1954619361
ID AB267331; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC AB267331;
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DT 04-JUL-2007 (Rel. 92, Created)
DT 04-JUL-2007 (Rel. 92, Last updated, Version 1)
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DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: SHD94J.
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KW .
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (28-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
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RN [2]
RA Tomitaka Y., Yamashita T., Ohshima K.;
RT "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT central Honshu, Japan";
RL J. Gen. Plant Pathol. 73:197-208(2007).
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FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /organism="Turnip mosaic virus"
FT /isolate="SHD94J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12230"
FT CDS <1. .>1527
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="BAF68939.1"
FT /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT LVLCGVFGGGMWMIIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT TDISLVQKHFGDIRMDLLGEDKLEPDELRLNKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT CDLHATIAGFPEREHELRQTGKAQPIDISEIPKANTELEPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
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SQ Sequence 1527 BP; 500 A; 332 C; 357 G; 338 T; 0 other;
ab267331 Length: 1527 04-JUL-2007 Type: N Check: 6478 ..
1 agtgatggaa tatcccgtca ttttatgagt gaatatggag cactcgaggc
51 agtccaccat cagaacacca atgatatgag caagttcttg aagctgaagg
101 gcaaatggaa caaaacgtta atcacgcgag acgtgttggt gctctgtgga
151 gtttttggag gtggaatgtg gatgataatc caacacctgc gttcgaaaat
201 ctccgaacct gtaacccatg aagcaaaagg caagaggcaa agacagaaac
251 taaagtttcg taatgcccga gacaacaaga tgggtaggga ggtgtatgga
301 gatgacgacg tcatagaaca cttctttggg gatgcctaca caaagaaggg
351 aaagagcaaa ggcagaacgc gtggcctcgg tcataaaaac aggaaattca
401 tcaatatgta tggatttgat cctgaagact tctcggcagt tagattcgtg
451 gacccactca caggagccac gctggacgac aatccgttca cagacatctc
501 ccttgtacaa aaacactttg gagacatacg aatggacctg cttggagaag
551 acaaactgga accggatgag ttgcgactga ataagacaat tcaggcctac
601 tacatgaaca ataaaacagg taaggcccta aaagtggatc taacaccaca
651 cgtaccactc aaggtatgtg acctccacgc aaccatcgct ggtttcccgg
701 aacgagaaca cgaactaaga cagactggaa aagctcagcc aatagacata
751 agtgagatac ctaaggccaa tactgagcta gaaccagttg accacgaaag
801 tagctccatg ttcagagggt tgcgcgacta caacccaata tctaataata
851 tttgtcatct gacgaatgta tcagatggag cgtcaaattc gttatatggt
901 gttggttttg ggccactcat actaacgaac cggcatcttt tcgaacggaa
951 taatggcgaa ctggtgatta aatctagaca tggtgagttc gtgattaaaa
1001 acacaactca attacatttg ctgccaattc cggatcggga tttattgcta
1051 atccgactac caaaggacat cccaccattc ccacagaaat tgggatttag
1101 acaacctgag aaaggtgaga ggatctgcat ggtaggatct aacttccaaa
1151 ccaagagcat tacgagtgtg gtctctgaga ctagcacgat aatgccagtg
1201 gaaaacagcc agttttggaa gcattggatt agcaccaaag atggccaatg
1251 tgggagccca atggtgagca cgaaggacgg aaagatactt ggcctacata
1301 gcctagcgaa tttccaaaat tccatcaact actttgctgc cttcccagat
1351 gatttcgctg agaaatatct ttacaccatc gaagcacatg agtgggtcaa
1401 acactggaaa tataacacca gtgcgattag ttggggctcc ttaaacatac
1451 aagcttcgca accagcaggc ttgttcaaag tgagcaaact catatcagac
1501 cttgatagca cagcagtgta cgcacaa