Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: SHD473J.
ACC No: AB267336
Dated: 2007-07-04 | Length: 1527 | CRC: 1797101317
ID AB267336; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
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AC AB267336;
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DT 04-JUL-2007 (Rel. 92, Created)
DT 04-JUL-2007 (Rel. 92, Last updated, Version 1)
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DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: SHD473J.
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KW .
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (28-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
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RN [2]
RA Tomitaka Y., Yamashita T., Ohshima K.;
RT "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT central Honshu, Japan";
RL J. Gen. Plant Pathol. 73:197-208(2007).
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FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /organism="Turnip mosaic virus"
FT /isolate="SHD473J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12230"
FT CDS <1. .>1527
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="BAF68944.1"
FT /translation="TDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT LVVCGVFGGGIWMIIQHLRSKLSEPVTHEAKGKRQRQKLKFRNARDNKMGREVHGDDDV
FT IEHFFGDAYTKKGKGKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT TDISLVQKHFGDIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPEREHELRQTGKAQPIDISEIPKANTELVPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
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SQ Sequence 1527 BP; 496 A; 333 C; 350 G; 348 T; 0 other;
ab267336 Length: 1527 04-JUL-2007 Type: N Check: 5923 ..
1 actgacggaa tatcccgtca tttcatgagt gagtatggag cactcgaggc
51 agttcaccac cagaacacta atgacatgag caaattccta aagctcaagg
101 gcaaatggaa taaaacgtta atcacacgag acgtgttggt ggtctgtgga
151 gtttttggag gcggaatctg gatgataatc caacacctgc gttcaaaact
201 ttctgaacct gtgacccatg aagcaaaagg caagaggcaa aggcagaaac
251 taaagtttcg caacgcccga gacaacaaga tgggtagaga agtacacgga
301 gatgacgacg tcatagaaca cttcttcgga gatgcctaca cgaagaaggg
351 aaagggcaaa ggcagaacac gtggcctcgg tcataaaaac aggaaattca
401 tcaacatgta tggattcgat cctgaagact tctcagcagt taggttcgtg
451 gatccactta ccggagccac actggacgat aatccgttta cagacatctc
501 ccttgtgcag aagcactttg gagacatacg aatggacctg cttggagaag
551 acgaactgga accagatgag ttgcggatga acaaaacaat tcaggcctac
601 tatatgaaca ataaaacagg taaggccttg aaagttgatc tcacaccaca
651 cataccactc aaggtgtgcg accttcatgc aaccatcgct ggtttcccgg
701 aacgagaaca tgaacttaga caaactggta aagctcagcc aatagacata
751 agtgaaatac ctaaggctaa tactgagcta gttccagtcg atcacgaaag
801 tagctccatg ttcagagggt tgcgcgacta caacccaata tctaataaca
851 tttgtcatct gacgaatgtg tcagacggag catcaaattc gttatatggt
901 gttggttttg ggccactcat actaacgaac cggcatcttt tcgaacggaa
951 taatggcgag ctagtgatta aatctaggca tggtgagttc gtgattaaaa
1001 acacaactca attacatttg ctgccaattc cggatcggga tttattgtta
1051 atccgactac caaaggacat tccacctttc ccgcaaaaac taggctttag
1101 acaacctgag aagggtgaga ggatctgtat ggtaggatcc aactttcaaa
1151 ctaagagcat tactagtgtg gtttctgaga ccagcacgat tatgccagtg
1201 gagaatagcc aattttggaa acattggatt agcactaaag atggccaatg
1251 tgggagccca atggtgagca caaaggatgg aaagatacta gggttacata
1301 gcctagcaaa tttccaaaac tccatcaact actttgctgc cttcccagat
1351 gattttgctg agaaatatct ctacactatc gaagcacacg agtgggtcaa
1401 acactggaag tacaacacta gtgcgattag ttggggctct ttaaacatac
1451 aagcctcgca accagcaggc ttgttcaaag tgagcaaact catatcagac
1501 ctcgacagca cagcagtgta tgcacaa