Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: TYH081J.
ACC No: AB267342
Dated: 2007-07-04 | Length: 1527 | CRC: -663946850
ID AB267342; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC AB267342;
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DT 04-JUL-2007 (Rel. 92, Created)
DT 04-JUL-2007 (Rel. 92, Last updated, Version 1)
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DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: TYH081J.
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KW .
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (28-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
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RN [2]
RA Tomitaka Y., Yamashita T., Ohshima K.;
RT "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT central Honshu, Japan";
RL J. Gen. Plant Pathol. 73:197-208(2007).
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FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /organism="Turnip mosaic virus"
FT /isolate="TYH081J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12230"
FT CDS <1. .>1527
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="BAF68950.1"
FT /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT LVLCGVFGGGMWMIIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT TDISLVQKHFGDIRMDLLGEDELEPDELRMHKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT CDLHATIAGFPEREHELRQTGKAQPIDISEIPKANTELVPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLC
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
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SQ Sequence 1527 BP; 487 A; 336 C; 363 G; 341 T; 0 other;
ab267342 Length: 1527 04-JUL-2007 Type: N Check: 679 ..
1 agtgatggaa tatcccgtca ttttatgagt gaatatggag cactcgaggc
51 agtccaccat cagaacacca atgatatgag caagttcttg aagctgaagg
101 gcaaatggaa caaaacgtta atcacgcgag acgtgttggt gctctgtgga
151 gtttttggag gtggaatgtg gatgatcatc cagcacctgc gttcgaaaat
201 ctccgaacct gtgacccatg aagcaaaagg caagaggcaa agacagaaac
251 taaagtttcg caatgcccga gacaacaaga tgggtaggga ggtgtatgga
301 gatgacgacg tcatagaaca cttctttggg gatgcctaca caaagaaggg
351 aaagagcaaa ggcagaacgc gtggcctcgg tcataaaaac aggaaattca
401 tcaatatgta tggatttgat cctgaagact tctcagcagt tagattcgtg
451 gacccgctca caggagccac gctggacgac aatccgttca cagacatctc
501 ccttgtacaa aaacactttg gagacatacg aatggacctg cttggagaag
551 atgaactgga accggatgag ttgcgaatgc ataagacaat tcaggcctac
601 tacatgaaca ataaaacagg taaggccctg aaagtggatc taacaccaca
651 cgtaccactc aaggtatgtg accttcacgc aaccatcgct ggtttcccgg
701 aacgagaaca cgaactaaga cagactggaa aagctcagcc aatagacata
751 agtgagatac ctaaggctaa tactgagcta gtaccagttg accacgaaag
801 tagctccatg ttcagagggt tgcgcgacta caacccaata tctaataata
851 tttgtcatct gacaaatgta tcagatggag cgtcgaattc gttatatggt
901 gttggttttg ggccactcat actaacgaac cggcatcttt tcgaacggaa
951 taacggtgag ctagtgatta aatctagaca tggtgagttc gtgatcaaaa
1001 acacgactca actccatttg ctaccgattc cggatcgaga cttgctgcta
1051 atccgactac cgaaagacat cccacctttc ccgcaaaaat taggctttag
1101 acaacctgag aagggtgaga ggatctgtat ggtgggatcc aacttccaaa
1151 ctaagagcat tactagtgtg gtctctgaga ctagcacaat tatgccagta
1201 gagaacagcc agttttggaa gcattggatt agcactaaag atggccagtg
1251 tgggagtcca atggtgagca caaaggacgg aaagatactt ggcctacata
1301 gcctagcgaa tttccaaaat tccatcaact attttgctgc cttcccagat
1351 gattttgccg agaaatatct ttgcaccatc gaagcacatg agtgggtcaa
1401 acactggaaa tacaacacca gtgcgattag ttggggctcc ttgaacatac
1451 aagcttcgca accagcaggc ttgttcaaag tgagcaaact catatcagac
1501 ctcgacagca cagcagtgta cgcacaa