Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, CP protein region, partial cds, isolate: NID078J.

ACC No: AB267352

Dated: 2007-07-04 | Length: 864 | CRC: 1754744895

                
ID   AB267352; SV 1; linear; genomic RNA; STD; VRL; 864 BP.
XX
AC   AB267352;
XX
DT   04-JUL-2007 (Rel. 92, Created)
DT   04-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Turnip mosaic virus gene for polyprotein, CP protein region, partial cds,
DE   isolate: NID078J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (28-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Yamashita T., Ohshima K.;
RT   "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT   central Honshu, Japan";
RL   J. Gen. Plant Pathol. 73:197-208(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NID078J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="BAF68960.1"
FT                   /translation="AGETLDAGLTDEQKQAEKERKERERAEKERERQKQLALKKGKNAA
FT                   LEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 281 A; 182 C; 234 G; 167 T; 0 other;

ab267352 Length: 864  04-JUL-2007  Type: N  Check: 9498  ..

       1  gcgggtgaaa cacttgatgc aggcctgaca gatgagcaga aacaggcaga
      51  aaaggagagg aaagagagag agagagcgga aaaagagcgc gaaaggcaaa
     101  agcagctagc gcttaagaaa ggcaaaaacg cagcactaga ggagggcgaa
     151  cgtgacaacg aagtgaacgc tggaacctct ggaactttta gtgtgccgag
     201  gctcaaaagc ctaacgagca agatgcgcgt gccaaagtac gagaaaagag
     251  tagctctcaa tctcgatcat ctgattctgt acacgccgga gcagacggat
     301  ctatccaata cgcgttcaac gcggaagcag tttgatacct ggtttgaagg
     351  tgtcatggct gactacgagc taacggagga taaaatgcaa ataattctca
     401  atggtttgat ggtctggtgc attgagaatg gaacctcccc aaatataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcctagc
     651  tcggtacgca tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  caagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggtaacgtc ggcacaacgg tagagaacac
     801  ggaaaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gtta