Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, CP protein region, partial cds, isolate: SHD469J.

ACC No: AB267365

Dated: 2007-07-04 | Length: 864 | CRC: -462940237

                
ID   AB267365; SV 1; linear; genomic RNA; STD; VRL; 864 BP.
XX
AC   AB267365;
XX
DT   04-JUL-2007 (Rel. 92, Created)
DT   04-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Turnip mosaic virus gene for polyprotein, CP protein region, partial cds,
DE   isolate: SHD469J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (28-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Yamashita T., Ohshima K.;
RT   "The genetic structure of populations of Turnip mosaic virus in Kyushu and
RT   central Honshu, Japan";
RL   J. Gen. Plant Pathol. 73:197-208(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SHD469J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="BAF68973.1"
FT                   /translation="AGETLDAGSTDEQKQAEKERKERERAEKEREKQRQLALKKGKNAA
FT                   LEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGIMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 288 A; 181 C; 227 G; 168 T; 0 other;

ab267365 Length: 864  04-JUL-2007  Type: N  Check: 8505  ..

       1  gcaggtgaaa cacttgacgc aggttcaaca gatgagcaga agcaggcaga
      51  aaaagaaagg aaggagagag agagagcaga gaaagagcgc gagaaacaaa
     101  ggcagttagc gcttaagaaa ggcaaaaacg cagcactaga ggaaggtgaa
     151  cgtgataacg aagtgaacgc cgggacctcc ggaactttta gtgtgcctag
     201  gcttaaaagc ctaacgagca aaatgcgagt gccaaagtac gagaaaagag
     251  tagctctcaa cctcgaccat ctgattctgt acacgccaga gcagacggat
     301  ctatccaata cgcgttcaac gcggaagcag tttgacactt ggtttgaagg
     351  tatcatggct gactatgagc taacggagga taaaatgcaa ataattctca
     401  atggtttaat ggtctggtgc attgagaatg gaacctcccc aaacataaac
     451  ggaatgtggg tgatgatgga cggtgacgat caggtggaat tcccgatcaa
     501  accgctcatt gatcacgcca agcccacatt taggcagata atggcccatt
     551  tcagtgacgt cgctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgca tttgacttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggattgga tggtaacgtc ggcacaacgg tagagaacac
     801  ggaaagacat acgaccgagg acgttaatcg gaacatgcat aacctacttg
     851  gcgttaaggg gtta