Sequence of DPV Arabis mosaic virus
Arabis mosaic virus genomic RNA, segment RNA2, complete sequence, isolated from lily.
ACC No: AB279741
Dated: 2009-01-28 | Length: 3707 | CRC: -924253241
ID AB279741; SV 2; linear; genomic RNA; STD; VRL; 3707 BP.
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AC AB279741;
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DT 26-OCT-2006 (Rel. 89, Created)
DT 28-JAN-2009 (Rel. 99, Last updated, Version 4)
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DE Arabis mosaic virus genomic RNA, segment RNA2, complete sequence, isolated
DE from lily.
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KW .
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OS Arabis mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
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RN [1]
RP 1-3707
RA Imura Y.;
RT ;
RL Submitted (24-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL Contact:Yoshiyuki Imura Nihon University, College of Bioresource Sciences,
RL Lab. of Plant Pathology; 1866 Kameino, Fujisawa, Kanagawa 252-8510, Japan
RL URL :http://hp.brs.nihon-u.ac.jp/~byouri/
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RN [2]
RA Imura Y., Oka H., Kimata K., Nasu M., Nakahama K., Maeda T.;
RT "Comparisons of complete RNA-2 sequences, pathological and serological
RT features among three Japanese isolates of Arabis mosaic virus";
RL Virus Genes 37:333-341(2008).
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FH Key Location/Qualifiers
FH
FT source 1. .3707
FT /organism="Arabis mosaic virus"
FT /segment="RNA2"
FT /mol_type="genomic RNA"
FT /country="Japan:Kochi"
FT /isolation_source="naturally infected lily cv. Casablanca"
FT /collection_date="1997"
FT /db_xref="taxon:12271"
FT CDS 261. .3512
FT /codon_start=1
FT /transl_table=1
FT /gene="RNA2"
FT /product="polyprotein P2 119KDa"
FT /db_xref="GOA:A0A9J8"
FT /db_xref="InterPro:IPR005054"
FT /db_xref="InterPro:IPR005305"
FT /db_xref="InterPro:IPR005306"
FT /db_xref="UniProtKB/TrEMBL:A0A9J8"
FT /protein_id="BAF35853.1"
FT /translation="MGILYSVYRWIDGPPPAPTYNIYGNFREIQATLREAENARQNMYM
FT FLELPLEYPQGAPLVLPTEPVKAQEVVVPPVKVIPSPPPMPRSYSRPIGAFAPTRSGFI
FT RATVERLTREREESRAAALFAELPLEYPQGAPLVVPRGFAAMRWNYHATWRRWYDASDE
FT RVLCAHPGGPALPPPPPPLKIQKLPSFEERLQTALLRQACARASALETSLGLNMAWVAK
FT AIIPSISVCCADGRTTGGQTIAQEADPINHRVASNTAPGRAQWISERRSALRRREQANS
FT LQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPSLRNAYAPRGLWRGPSTRANYTLDF
FT RLNGIPTGQNTLEILYNPVSDEEMDDYRDRGMSAVVIDALEIAINPFGMPGNPTDLTVV
FT TTYGHERNMERAFIGSSSTFLGNGLARAIFFPGLQYSQEEPRRESLIRLYVASTNATVD
FT ADSILAAISVGTLRQHIGSLHNRTVASSVHAAQVQGTTLRATMMGNAVVVSPEGSLVTG
FT TPEANVQMGGGSSMRMVGPLAWENVEEPGQTFTIRNRSRSMRVDRNADVGVALPRMSTT
FT TRGLAGRGSVQVPKDCQAGKYLKTLDLRDMISGFSGIQYEKWITAGLIMPDFKVVIRYP
FT ANAFTGITWVMSFDAYNRITSSISTTASPAYTLSVPHWLLHHKNGTTSCDIDYGELCGH
FT ALWFSATTFESPKLHFTCLTGNNKELAADWEFVVELYAEFEAAKTFLGRPNFIYSAEAF
FT NGSFKFLTIPPLEYDLSTTSAYKSVSLLLGQTLVDGIHKVYNYNNTLLSYYLGIGGVVK
FT GRVHICSPCTYGIVLRVVSEWNGVTNNWNQLFKYPGCYIDEDGNFEIEIRSPYHRTPLR
FT LLDGQAASSFTSTLNFYAISGPIAPSGETAKMPVVVQIDEIALPDLSVPTFPNDYFLWV
FT DFSAFTVDVEEYVIGSRFFDISSTTSTVALGDNPFAHMIACHGLHHGILDLKLMWDLEG
FT EFGKSSGGVTITRLCGDKATGMDGASRVCALQNMSCETELYVGNYAGANPNTALSLYSR
FT WLAIKLDKAKSMKMLRVLCKPRGNFEFYGRTCFKV"
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SQ Sequence 3707 BP; 913 A; 781 C; 900 G; 1113 T; 0 other;
ab279741 Length: 3707 28-JAN-2009 Type: N Check: 2167 ..
1 atgaaaaatt ttgtggagtt ttcatataaa cgcaatccac aaccctttca
51 acgaagagtt tgagaaactc aaaattgttc tttgtcaatc cgttaagagc
101 ggaaacatag ttaagccgtt aagagcggta caaaagcgaa gagtttaaga
151 aactcacaat tttcttctat ttccttctta cttacgtgtt ttatttattt
201 agtgtttgtt ttgtttgttt aataggagga gtattttgct tcttttaatt
251 ttctgccctt atgggcattt tatattctgt ttatcggtgg attgatggtc
301 caccgccagc gcctacctac aacatatacg gaaatttccg tgaaattcag
351 gctaccttga gagaagctga gaatgcgcgg caaaacatgt atatgtttct
401 ggagttacca ttggaatacc ctcaaggtgc tcctttggtg ctgccgactg
451 agccggtaaa agctcaagag gtggtggtgc cacctgtgaa ggttattcct
501 tcaccgcccc ctatgccaag gtcttattct aggccaattg gggcgtttgc
551 accaacccgg tcaggattta tccgggccac tgtggaaaga ctcacccggg
601 aacgggagga gtcgagagct gcggcactct ttgccgaatt acctttggag
651 tacccacaag gtgctccttt ggttgtcccc cgtggcttcg cagccatgag
701 gtggaactat catgccacct ggaggcggtg gtatgacgcc agtgatgagc
751 gtgttttatg cgctcaccct ggtggacctg ctttgcctcc gccccccccc
801 cccttaaaaa tccaaaaact accctctttc gaggagaggt tgcagactgc
851 ccttttaagg caggcttgtg ctagggcttc tgccctggag acctcgctgg
901 gccttaatat ggcctgggtg gccaaggcta tcatccccag catttcagta
951 tgttgcgctg atggtaggac taccggcggg caaacaattg cccaggaagc
1001 tgatcctatt aaccataggg ttgcttccaa cacagccccc ggtagggcac
1051 aatggatctc agagcgccgc agtgctttga gacggagaga acaggctaat
1101 agcctgcagg gccttgctgc tcaaacggac atgacgtttg agcaagctag
1151 aaatgcttat ctcggcgcgg ccgatatgat agagcaaggt ctaccgttgc
1201 tgccttcact gagaaatgct tatgcacctc gtggtttatg gaggggacct
1251 tccaccagag ccaattatac gcttgatttt cggctcaatg gaatccccac
1301 cggacaaaat actttagaaa tactgtataa tccggtgtcg gacgaggaaa
1351 tggatgacta ccgtgacagg ggtatgtcag cggtcgtgat tgatgcactg
1401 gaaattgcta tcaatccttt tggaatgcca ggcaatccga ctgatcttac
1451 tgtcgttacg acatatgggc acgaacgtaa tatggagcgt gccttcattg
1501 gctcttcgtc tacctttctt ggaaatggtt tagcgagagc tattttcttt
1551 cctggtttgc aatatagtca ggaagaaccg aggcgcgaat ccttgattcg
1601 tctatatgtt gcttctacta atgccactgt tgatgctgat tctatattag
1651 cagccattag tgttggcact ttgcgccagc acattggttc gcttcataat
1701 agaacggtgg caagttctgt gcatgctgct caagtgcagg gcactacttt
1751 gagagctact atgatgggta atgctgtcgt ggtttctcct gaaggaagtc
1801 ttgttactgg aacccctgaa gccaatgttc aaatgggagg tggttctagc
1851 atgcgaatgg ttggtcccct ggcgtgggaa aatgttgaag aaccaggtca
1901 gacctttacc ataagaaacc gctcccggtc tatgcgagta gatcggaatg
1951 ctgatgttgg agttgccctt cctagaatga gcacaacaac gcggggtctt
2001 gctggtagag gttctgtcca ggtacccaaa gactgccagg cagggaagta
2051 tctgaaaacc cttgatttga gagatatgat tagtgggttt tcaggtattc
2101 aatatgaaaa gtggatcact gctggactta ttatgccaga ttttaaagtg
2151 gtgattcgct acccggccaa tgcttttaca ggtattacgt gggttatgag
2201 ctttgatgcc tataatcgaa taactagtag tatttctacc actgctagtc
2251 ctgcgtatac actgtcagtc ccacattggc tgttgcatca caaaaatggg
2301 acaacctcat gtgatattga ttatggagag ctctgtggcc atgctttgtg
2351 gtttagtgcc actacttttg agagccccaa actccatttc acatgcctca
2401 ctggaaataa caaagaactt gctgcagatt gggaatttgt agtagagcta
2451 tatgccgagt ttgaggcggc aaaaactttt cttggaagac ccaatttcat
2501 ttatagcgct gaagctttca atggatcttt caagtttctg actattccac
2551 cactggaata tgacctgagt actaccagtg cctacaagag tgtgtccctt
2601 cttctgggcc aaactcttgt tgatgggatt cacaaagtgt acaattacaa
2651 taatacactt ttgagttact atcttggtat tggtggtgtg gtcaagggca
2701 gagtacatat atgcagccct tgtacttatg gcatagtcct aagagttgtt
2751 agtgaatgga acggggtcac taacaactgg aatcaattgt ttaaataccc
2801 cggatgttat atcgatgagg atgggaattt tgaaattgaa attcgttccc
2851 catatcatcg aactccactg cgtttactgg atggacaggc ggcgagttct
2901 tttacgagca cgctgaattt ctatgcaatt tcagggccaa tagccccaag
2951 tggagaaact gccaagatgc cagtggtagt gcaaattgat gaaattgcac
3001 tgccggatct ttctgtccca actttcccaa atgattattt cctttgggtg
3051 gacttttctg ctttcactgt tgatgtagaa gagtatgtaa tagggtcgag
3101 gttttttgat atttcctcta ccactagtac tgtcgccctg ggagataatc
3151 cttttgctca catgatagct tgtcatggac tccatcatgg aatccttgac
3201 cttaagttaa tgtgggattt ggaaggtgag ttcggaaaga gttctggtgg
3251 tgttactatc acacgtttgt gtggtgataa ggctactggc atggatggag
3301 catctcgtgt ttgtgctttg caaaacatga gttgcgaaac tgaactgtac
3351 gttgggaatt atgctggtgc caatcctaac acagcacttt ccctgtacag
3401 ccgttggctt gctattaagt tggacaaagc taagagtatg aaaatgctca
3451 gagtgttgtg caagccaaga ggaaactttg aattttacgg gagaacgtgc
3501 tttaaagttt agtttcctca aatagtcttg ggaatctgac tataaaagac
3551 cctacttgta ttatatttat atttagcttg tttactgctt ctgtgtgttt
3601 aatttcatgc atttagtggc gacagtgtgt tgtttgtcct ttggacacac
3651 ttgccttgtt ggacgcaaaa agattttcat tttcttttta ctgcttttgt
3701 gaatttt