Sequence of DPV Yambean mosaic virus
Yambean mosaic virus NIa-NIb-CP gene for polyprotein, partial cds.
ACC No: AB289438
Dated: 2008-12-29 | Length: 2746 | CRC: -481544758
ID AB289438; SV 1; linear; genomic RNA; STD; VRL; 2746 BP.
XX
AC AB289438;
XX
DT 29-DEC-2008 (Rel. 98, Created)
DT 29-DEC-2008 (Rel. 98, Last updated, Version 1)
XX
DE Yambean mosaic virus NIa-NIb-CP gene for polyprotein, partial cds.
XX
KW .
XX
OS Yambean mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus; unclassified Potyvirus.
XX
RN [1]
RP 1-2746
RA Damayanti T., Desmiarti D., Nurlaelah S., Mise K.;
RT ;
RL Submitted (04-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Kazuyuki Mise Kyoto University, Graduate School of Agriculture;
RL Kitashirakawa-oiwakecho, Kyoto, Kyoto Prefecture 606-8502, Japan URL
RL :http://www.plant-pathology.kais.kyoto-u.ac.jp
XX
RN [2]
RC Publication_Status: Available-Online
RA Damayanti T., Susilo D., Nurlaelah S., Sartiami D., Okuno T., Mise K.;
RT "First report of Bean common mosaic virus in yam bean [Pachyrhizus erosus
RT (L.) Urban] in Indonesia";
RL J. Gen. Plant Pathol. 74:438-442(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2746
FT /organism="Yambean mosaic virus"
FT /isolate="Bogor"
FT /mol_type="genomic RNA"
FT /country="Indonesia:Bogor, Darmaga"
FT /isolation_source="Yambean leaves"
FT /collected_by="Tri Asmira Damayanti, Siti Nurlaelah"
FT /collection_date="Jun-2006"
FT /identified_by="Tri Asmira Damayanti, Kazuyuki Mise"
FT /db_xref="taxon:418827"
FT CDS <1. .2493
FT /codon_start=1
FT /transl_table=1
FT /gene="NIa-NIb-CP"
FT /product="polyprotein"
FT /protein_id="BAH03426.1"
FT /translation="WQPDKIAWGSLNLVDDQPKEEFKVSKLISDLFTSTVKTQSSQCWV
FT LDALEGNLKACAHAESALVTKHVVKGKCPFFEQYLNEREEAATFFKPLMGSYQPSKLNR
FT EAFKKDFFKYNKVVILNEVDHASFEAAVQGVIMMMNEFGFAECTYVTDPDEIYSSLNSK
FT AAVGAQYKGKKQDYLQDMDEFDKERLLFLSCERLFYGKKGLWNGSLKAELRPTEKVVAN
FT KTRTFTAAPIDTLLGAKVCVDDFNNQFYNFNLICPWTVGMTKFYGGWDKLMRKLPDGWV
FT YCHADGSQFDSSLTPLLLNAVLGIRKFFMEEWWVGEEMLENLYAEIVYTPILAPDGTIF
FT KKFRGNNSGQPSTVVDNSLMVVIAVYYACHKVGWSDEDIQNRLVFFANGDDIVLSMKEE
FT DLEVLDTFAASFAELGLNYNFNERTKQREDLWFMSHHAIEIDGTYVPKLEMERIVSILE
FT WDRSKEIMHRTEAIWQAMIEAWGYTELLQEIRKFYLWLLGKGEFKELAANGKAPYIAES
FT ALRKLYTDKHVAMEELMKYLEVLDFDHSVGCGDTVHLQSLEEKQPELDAGSDSKTKKDK
FT GKEEKNDHKSKAVISAKDKDVDAGSKGRIVPRLQKITKKMNLPMVKGKMILDLNHLLEY
FT KPEQIELFNTRASRSQFEAWYNAVKQEYELDDGQMAIVMNGFMVWCIDNGTSPDINGTW
FT IMMDGVEQVEYPLKPMVENAKPTLRQIMHHFSEAAEAYIEMRNAEKPYMPRYGLLRNLR
FT DKNLARYAFDFYEVTSKTTDRAREAIAQRKTAALSNVNNKLFGLDGNIATTSENTERHT
FT ARDVNQNMHTLLGMGPPQ"
FT mat_peptide <1. .117
FT /product="NIa protein"
FT mat_peptide <118. .1665
FT /product="NIb protein"
FT mat_peptide 1666. .2493
FT /product="coat protein"
XX
SQ Sequence 2746 BP; 909 A; 443 C; 668 G; 726 T; 0 other;
ab289438 Length: 2746 29-DEC-2008 Type: N Check: 5801 ..
1 tggcagccgg ataagatagc atggggttca ttgaatcttg tagacgacca
51 acccaaagaa gagttcaaag tgtcaaaact catctcagat ttattcacca
101 gcacagtgaa gacacaaagt agccagtgct gggttcttga tgcacttgag
151 ggcaatttga aggcatgtgc acatgcagag agcgcattag tcacaaagca
201 cgtagtgaaa ggaaaatgtc cattctttga gcagtatctt aacgaaaggg
251 aagaagcagc cactttcttc aaacctctaa tgggatcata tcagccaagt
301 aagttgaaca gggaggcttt caaaaaggat ttcttcaagt acaacaaagt
351 tgtaattcta aatgaagtgg atcatgcatc ttttgaagca gcagttcaag
401 gtgtgatcat gatgatgaat gagtttggat tcgctgaatg cacatatgtt
451 actgatccag atgaaatata ctcatccctc aattcaaaag ctgcagttgg
501 agcacaatac aaaggaaaga aacaggacta tctacaagac atggatgaat
551 ttgataaaga gcgactcttg tttcttagct gtgaaagatt gttttatgga
601 aagaaaggtc tgtggaatgg ttcactcaaa gctgaattga gaccaacaga
651 aaaagttgtt gcaaataaaa caagaacttt tacagctgca ccaattgaca
701 cactattagg tgcgaaagtc tgtgtggatg atttcaataa tcagttttac
751 aacttcaatc taatctgtcc atggacggtt ggaatgacca agttttatgg
801 aggatgggac aagttgatga gaaagctacc tgatggctgg gtgtattgcc
851 atgctgatgg atcacagttt gatagttcat taacacctct tcttctgaat
901 gctgttttgg gaattagaaa atttttcatg gaagagtggt gggttggtga
951 ggaaatgtta gaaaatctgt acgcagaaat tgtgtacaca ccaattttgg
1001 ctccagatgg caccattttc aaaaagttcc gaggtaacaa cagtggtcag
1051 ccttctacag tagttgataa ctcacttatg gttgtgatag cggtttacta
1101 tgcttgtcac aaggttgggt ggagtgatga agacatacaa aacagactgg
1151 tcttctttgc aaatggtgat gacattgtgc tatcaatgaa agaagaggac
1201 ttggaggttc ttgacacttt tgctgcttct tttgcggagt tgggattgaa
1251 ttacaatttt aatgaaagaa caaaacaaag agaagacctt tggttcatgt
1301 cgcaccatgc aattgagatc gatggcacat atgtgccaaa gcttgagatg
1351 gagcgaattg tgtcaatttt ggaatgggac agaagcaagg aaataatgca
1401 cagaactgaa gcaatttggc aggccatgat tgaagcgtgg ggttacacag
1451 agttattgca agaaatccgt aaattctact tgtggttgct tggaaaaggt
1501 gaattcaaag aattggcggc aaatggaaaa gcaccataca tagcagaatc
1551 agctttgaga aaactgtaca cagataaaca tgttgctatg gaagagctga
1601 tgaaatattt agaggtactc gactttgatc actcggttgg gtgtggtgat
1651 acagtgcatc tacaatcgtt agaagaaaaa caaccagagt tagatgcagg
1701 atcggattca aagacaaaga aggataaggg caaggaagag aagaatgacc
1751 acaagagtaa ggccgtgatt agtgcaaagg ataaggatgt ggatgcaggc
1801 tcaaaaggaa gaattgtacc acggcttcag aagatcacaa agaaaatgaa
1851 tttgcccatg gtgaaaggga aaatgatatt agatttaaac catttgttgg
1901 aatacaaacc agagcagata gaacttttta atacgagagc atctcgtagt
1951 cagtttgaag catggtataa tgcagtgaaa caggaatatg aacttgatga
2001 tgggcagatg gcaattgtga tgaatggttt catggtttgg tgcattgaca
2051 atggaacctc tcctgatatc aatggaacat ggattatgat ggatggggta
2101 gagcaagttg aatatccact gaaaccaatg gtagagaatg caaagccaac
2151 tttgagacag atcatgcatc atttttcaga ggcagctgaa gcctacattg
2201 aaatgagaaa tgctgagaag ccatacatgc ctaggtatgg tcttctaaga
2251 aatttgagag ataaaaatct agctcgctat gctttcgact tctatgaagt
2301 tacatctaag acaacagata gagcaaggga agcaatagca cagagaaaga
2351 cagcagctct cagcaatgtt aacaacaagt tgtttggact tgatggcaat
2401 attgcaacaa ccagcgagaa tactgaaagg cacactgcta gggatgtgaa
2451 ccagaatatg cacacattgc ttggaatggg ccctccgcag taaaggtcag
2501 gtaagctgac cacagttagc atctcgcgtc actgaatagt tttatatagt
2551 aatataatat gttctcttta gtttcagtgt ggttacacca ccttttatga
2601 agcttttgtg atagagtgga ttttccacca acatattaca agtactatat
2651 atttatgaaa ggtaggaagg accattgcag gagcgagggg gcgtagtgtg
2701 gttacaccac gaatcgcaag gtagctttgg caatgtttgt tgttcc