Sequence of DPV Torque teno midi virus 5
Torque teno midi virus DNA, complete genome, isolate: MDJHem2.
ACC No: AB303552
Dated: 2008-12-16 | Length: 3208 | CRC: -369562707
ID AB303552; SV 1; circular; genomic DNA; STD; VRL; 3208 BP.
XX
AC AB303552;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJHem2.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3208
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3208
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJHem2"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(217. .590,2185. .2587)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLV3"
FT /protein_id="BAF76074.1"
FT /translation="MQQASLLSTRDFYSPTRFNQDTKNQLWMSIIADVHDSTCDCPTPF
FT AHLLSSIFPPGHQDRDRTINEILARDYKERCHSGGLADEDPGSAATRDIKQEDTGEDLD
FT PRDIDILLGAAAAAAEEEDTRNTPQKEQMHKGTQAPPNTPRKDPEMSPLTLRRRYLPRR
FT RREPQTVHPQAAAATAAPQKKPPPALLRAEKQAKIFTTTDRNFRVKPFDPGCDWETEQE
FT CAKAFCRPPRKYKNDPPYYPWLPPTPIVNFHLNYKF"
FT CDS join(217. .590,1953. .2388)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VLV4"
FT /protein_id="BAF76075.1"
FT /translation="MQQASLLSTRDFYSPTRFNQDTKNQLWMSIIADVHDSTCDCPTPF
FT AHLLSSIFPPGHQDRDRTINEILARDYKERCHSGGLADEDPGSAATRDIKQEDTGEDLD
FT PRDIDILLGAAAAAAEEEDTSGAALKLGNHQLMTQNTKETFPCPVTCKKQYKYQIQKNK
FT AQKPCSMTGITEGALLHRQLLKECKKTSKLIHLSNLMIQKHPPKRTDAQRNSSSTKHTK
FT KRSRDVSAHSAKKIPAKKKKRASDSSSTSSSSNSSTSKETSSSSSQS"
FT CDS 217. .594
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLV5"
FT /protein_id="BAF76076.1"
FT /translation="MQQASLLSTRDFYSPTRFNQDTKNQLWMSIIADVHDSTCDCPTPF
FT AHLLSSIFPPGHQDRDRTINEILARDYKERCHSGGLADEDPGSAATRDIKQEDTGEDLD
FT PRDIDILLGAAAAAAEEEDTR"
FT CDS 441. .2435
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VLV6"
FT /protein_id="BAF76077.1"
FT /translation="MPFWWARRRRPWFGRYKRYKTRRYRRRFRPKRHRYPFRRRRRRRR
FT RRRYKVRRKKKKIVIQQWQPESIKKCKIKGFGCLVLGSQGTQYLCYTNEAANYVPPKSP
FT GGGGFGCEYITLEYLYKQWKAHNCIWTASNNYKDLCRYTGCTITLFRHKYIDFIFCYSV
FT MPPFDINKLTYPDIQPQNLLLRQRHKLILSQASNPKGKLRVKVKIKPPKTMQTKWYFQK
FT QIAELPLVQLQAAACDVPFVRIGCCNPSQVSTIYFLNPQFYYDTDWGATKNHAYMYIRT
FT GVSLTGTYKGKDGKDHEKIIGEWKKMGEAQYYESINYDTGWFNSQFLSSYKIEKTSTKQ
FT PYAHLPIGVARYNPDQDTGQGNEVWLATIFKGHYDKPTVTDDFVIRGLPLWMAFYGYWS
FT YLKYKTKDKGVFTNHMFVVKCPAIKPMQSAITTDYYPVIDLEFIQGKWPYEEQVTENHK
FT KLWYPTAEHQTVTINNFVESGPYVPRLENQKSSTWELNYSYKFYFKWGGPQAGEPPVDD
FT PKYQGDFPMPSNMQETIQISDPKKQSPETMFHDWNYRRGFITSSALKRMQENLQTDSSL
FT ESDDTETPPKKNRCTKELKLHQTHQEKIQRCLRSLCEEDTCQEEEESLRQFIHKQQQQQ
FT QHLKRNLLQLFSELKNKQRFLQLQTGILE"
XX
SQ Sequence 3208 BP; 1114 A; 748 C; 620 G; 726 T; 0 other;
ab303552 Length: 3208 16-DEC-2008 Type: N Check: 9427 ..
1 gggtggagac tacaaaacta tataactaac tgcagtgacg aatggctgag
51 tttaccccgc tagacggtgc agggaccgga tcgagcgcag cgaggaggtc
101 cacagctgcc caagggcggg agcccgaggt gagtgaaacc accgaggtct
151 aggggcaatt cgggctaggg cagtctagcg gaacgggcaa gaaacttaaa
201 tatactttct ttacagatgc aacaagcttc actactttca acaagagact
251 tttattcacc tacaagattt aatcaagata ctaaaaacca actatggatg
301 tctattattg ctgatgttca tgacagtacc tgtgactgtc caactccttt
351 tgctcatttg ctgtctagta tatttcctcc tggtcatcaa gatcgtgata
401 gaacaattaa tgaaatactg gcaagagatt acaaagaaag atgccattct
451 ggtgggctcg cagacgaaga ccctggttcg gccgctacaa gagatataaa
501 acaagaagat acaggagaag atttagaccc aagagacata gatatccttt
551 taggcgccgc cgccgccgcc gcagaagaag aagatacaag gtaagaagaa
601 aaaaaaaaaa gattgtaatt caacaatggc agcctgaaag cataaaaaaa
651 tgtaagatta aaggatttgg ctgcttagta ttaggaagtc aaggtactca
701 atacttatgt tatacaaatg aagcagcaaa ctatgtacca cctaaaagcc
751 ctgggggtgg aggctttggc tgtgaatata tcactcttga atacttatat
801 aaacaatgga aagcacataa ctgcatatgg actgcctcaa ataactataa
851 agacttatgc agatacacag gatgtactat tacccttttc agacataaat
901 atatagattt tatattttgt tactctgtca tgccaccatt tgacataaac
951 aagttaactt acccagatat acagccacaa aacttactac taagacaaag
1001 acataaacta atacttagcc aagctagcaa cccaaaagga aaattaagag
1051 ttaaagttaa aataaaacct cctaaaacta tgcaaactaa atggtatttt
1101 caaaaacaaa ttgcagaact gccactagtt cagctacaag ctgcagcctg
1151 cgatgttcca tttgttagaa ttggatgctg caaccctagc caggtatcaa
1201 ctatttattt tttaaatcca caattttatt atgatactga ttggggggca
1251 actaaaaacc acgcctacat gtatattaga acaggagtgt cacttacagg
1301 aacatataaa ggtaaagatg gtaaagacca tgaaaaaata ataggtgagt
1351 ggaaaaaaat gggtgaggca caatactatg aaagtataaa ctatgacact
1401 ggatggttta actctcaatt tttatcctca tacaaaattg aaaaaactag
1451 tacaaaacaa ccttatgctc acctacccat aggtgttgcc agatataatc
1501 ctgaccaaga cacaggtcaa ggaaatgaag tttggctagc aactattttt
1551 aaaggtcact atgacaaacc tactgtaaca gatgactttg ttattagagg
1601 cctaccccta tggatggctt tctatggcta ctggagctat ctaaaataca
1651 aaaccaaaga taaaggtgtt tttacaaatc atatgtttgt tgtaaaatgc
1701 cctgcaatta aaccaatgca atcagcaatt acaactgact actatccagt
1751 catagattta gaatttatac agggtaaatg gccttatgaa gaacaagtaa
1801 cagaaaacca taaaaagcta tggtatccca cagctgaaca tcaaacagta
1851 actattaata actttgtaga atcaggacca tatgtaccta gactagaaaa
1901 tcaaaaaagc tctacatggg aactaaatta ttcttacaaa ttttacttta
1951 agtggggcgg ccctcaagct ggggaaccac cagttgatga cccaaaatac
2001 caaggagact ttcccatgcc cagtaacatg caagaaacaa tacaaatatc
2051 agatccaaaa aaacaaagcc cagaaaccat gttccatgac tggaattaca
2101 gaaggggctt tattacatcg tcagctctta aaagaatgca agaaaacctc
2151 caaactgatt catctctcga atctgatgat acagaaacac cccccaaaaa
2201 gaacagatgc acaaaggaac tcaagctcca ccaaacacac caagaaaaga
2251 tccagagatg tctccgctca ctctgcgaag aagatacctg ccaagaagaa
2301 gaagagagcc tcagacagtt catccacaag cagcagcagc aacagcagca
2351 cctcaaaaga aacctcctcc agctcttctc agagctgaaa aacaagcaaa
2401 gatttttaca actacagaca ggaattttag agtaaaacca tttgacccag
2451 gatgtgactg ggaaacagaa caagaatgtg caaaagcatt ttgtagacca
2501 cctagaaaat ataaaaatga ccctccttac tacccatggt tacctccaac
2551 acccattgta aactttcacc ttaactataa attctaggcc cttactgttc
2601 acttagtact tgctgtttaa taaagtttgc ccccccaaaa aaaaaaaaaa
2651 aaaaaaaaaa aataaaaatt gcaaaaattc ggcgctcgcg cgcgctgcgc
2701 gcgcgcgagc gccgtcacgc gccggcgctc gcgcgccgcg cgtatgtgct
2751 aacacaccac gcacctagat tggggtgcgc gcgtagcgcg cgcaccccaa
2801 tgcgccccgc cctcgttccg acccgcttgc gcgggtcgga ccacttcggg
2851 ctcggggggg cgcgcctgcg gcgcttattt actaaacaga ctccgagtcg
2901 ccatttggcc cccctaagct ccgcccccct cataaatatt cataaaggaa
2951 accacaaaat ttgaattgcc gaccacaaac tgccatatgc taattacttc
3001 cccttttaca ctataaaaag gggaagtggg ggggcatagc ccccccacac
3051 cccccgcggg gggggcagag ccccccccgc acccccccta cgtcacagga
3101 cacgcccccg ccgccatctt gggtggagca gggcgggggc taaaatggcg
3151 ggacccaatc aatttatact ttcactttcc aataacaaca cgccacgtca
3201 ccatacag