Sequence of DPV Torque teno midi virus 6
Torque teno midi virus DNA, complete genome, isolate: MDJHem3-1.
ACC No: AB303553
Dated: 2008-12-16 | Length: 3198 | CRC: 119758571
ID AB303553; SV 1; circular; genomic DNA; STD; VRL; 3198 BP.
XX
AC AB303553;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJHem3-1.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3198
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3198
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJHem3-1"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(217. .590,2164. .2587)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLV7"
FT /protein_id="BAF76078.1"
FT /translation="MQNISAEDFYKETHFNQVTKHQLWMSIVTDAHDSVCNCWHPFAHM
FT LANIFPPGHKDRNLTINQILERDLKETWPSGGDADASHGLVAGEDTGGEQIINPEEKEE
FT EYIEDEEITELLKAADVAATRFSRLLLKEKEKIPTHTPRPEKRKQRDPEMSPLTLRRKY
FT MARATTRLQHPPAPTAAAPAAAVHQAEPPNINCRPESKTEKSSAPNRVPRLTRFKPGFE
FT RETENELAQAFKRPPRMFKEDAAFYPWLPRFTPLVNFHLNFKF"
FT CDS join(217. .590,1941. .2367)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VLV8"
FT /protein_id="BAF76079.1"
FT /translation="MQNISAEDFYKETHFNQVTKHQLWMSIVTDAHDSVCNCWHPFAHM
FT LANIFPPGHKDRNLTINQILERDLKETWPSGGDADASHGLVAGEDTGGEQIINPEEKEE
FT EYIEDEEITELLKAADVAATSGEATTHQNKKQKILKKRTSILCPINNRKQYQLQTLFQK
FT SMTQSLDPGTTEGVALQEQLLKECRKTSNLMNLYQQIQQAAPQRKRKNTYPHSKTRKKK
FT TKRSRNVSSHSAKKIHGKSHHKTPTSSSSYSSSTSSSSPSSRTS"
FT CDS 217. .594
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLV9"
FT /protein_id="BAF76080.1"
FT /translation="MQNISAEDFYKETHFNQVTKHQLWMSIVTDAHDSVCNCWHPFAHM
FT LANIFPPGHKDRNLTINQILERDLKETWPSGGDADASHGLVAGEDTGGEQIINPEEKEE
FT EYIEDEEITELLKAADVAATR"
FT CDS 432. .2432
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VLW0"
FT /protein_id="BAF76081.1"
FT /translation="MAFWWRRRRKPWFGRWRRYRRRTNYKPRRKRRRIYRRRRNYRTTK
FT GRRRRRYKVRRKQQKILVKQWQPECIRKCKIKGLGTIVLGAEGTQYRCYTDYLDEWTNP
FT KVPGGGGFGCELFTLRYLYKMYLARKNIWTFSNKYKDLVRYTGTRFTFFRHPETDFILA
FT YDIQPPFHITKWTYMSIHPQMLLLRKHKKLLLSTATKPNGKLTTRFKIRPPKQLVTKWF
FT FQKDFAQYGLVAIAAAACNLRYPWLACCNENLIITLRYLQPQFYHNSAWAQTTKEYNPV
FT YGTQPMKKTLTFNYIIGNQRGTYTMSNSDISDYDSSVSISKGWFQPKILNAYEVKDNTV
FT TQALTPCGVLRYNPADDDGQGNKLWVVNTLTYNWKIPTDDDLILEGYPLWLMLYGYTSF
FT LYQVKADKNPFSSSLIVVKSSALQRVFGTDTTGWYPLIDKSFMDGKGPGNTDPILLHRK
FT YWYPSLYGQRDSISQLVNCGPYVPKYNETKNSTWQCNYKYTFYFKWGGHYPPEQEAENP
FT EKKNIYPVPDKQQETISIADPISEKYDTVFRSWDYRRGSLTRTAIKRMQENLESDESLS
FT TDSAGCSSKKKKKYLPTLQDPKKENKEIQKCLLSLCEENTWQEPPQDSNILQLLQQQHQ
FT QQQSIKQNLLTLIADLKAKQRNLLHQTGYLA"
XX
SQ Sequence 3198 BP; 1118 A; 762 C; 614 G; 704 T; 0 other;
ab303553 Length: 3198 16-DEC-2008 Type: N Check: 7758 ..
1 gggtggagac tactcatcta tataactaag tagggtggcg aatggctgag
51 tttaccccgc tagacggtgc agggaccgga tcgagcgcag cgaggaggtc
101 cccagctgcc caagggcggg agcccgaggt gagtgaaacc accgaggtct
151 aggggcaatt cgggctaggg cagtctaccg gaacgggcaa gaaacttaaa
201 tatatttctt ttacagatgc aaaatatctc agctgaagac ttctataaag
251 aaactcactt caaccaagta accaaacacc agctatggat gtctattgtt
301 actgacgctc atgacagtgt ctgcaactgc tggcatcctt ttgctcatat
351 gcttgctaat atttttcctc ctggccataa agataggaat cttaccatta
401 atcaaatact tgaaagagat ctcaaagaaa catggccttc tggtggagac
451 gcagacgcaa gccatggttt ggtcgctgga gaagatacag gaggagaaca
501 aattataaac ccagaagaaa aagaagaaga atatatagaa gacgaagaaa
551 ttacagaact actaaaggcc gccgacgtcg ccgctacaag gtaagaagaa
601 aacaacaaaa aattctagta aaacaatggc aaccagaatg cataagaaaa
651 tgtaaaatta aaggacttgg aactatagtt ttaggagcag aaggaacaca
701 gtatagatgc tatactgact acctagatga atggacaaat cctaaagtac
751 caggaggtgg ggggtttgga tgtgaactgt ttactctaag atacctatat
801 aaaatgtatc tagccagaaa aaacatctgg accttttcaa acaaatataa
851 agacctagta agatatacag gcactagatt tactttcttc agacatccag
901 aaacagattt tatattagca tatgatatac aaccaccttt tcacataacc
951 aaatggacat acatgtcaat acacccacaa atgctactct taagaaaaca
1001 caaaaaacta ttacttagca ctgcaacaaa accaaacgga aaattaacaa
1051 caagatttaa aataagacct cctaaacaac tagtaaccaa atggttcttt
1101 caaaaagact ttgctcagta tggcctagtt gccatagctg ctgcagcatg
1151 caatcttaga tatccctggc tagcctgctg caatgaaaac ttaattataa
1201 cacttagata cttacaacca caattttatc acaacagtgc ttgggctcaa
1251 accactaaag aatacaatcc tgtatatggc acacaaccaa tgaaaaaaac
1301 acttaccttt aactatataa taggaaacca aagaggcacc tatacaatga
1351 gcaattcaga cattagcgac tatgactctt cagtgagtat tagcaaaggg
1401 tggtttcagc ctaaaatact aaatgcctat gaagttaaag acaatactgt
1451 aacacaagct cttacaccct gtggtgtact tagatacaat cctgcagatg
1501 atgatggcca aggaaacaaa ctatgggtag ttaatacatt aacatacaat
1551 tggaaaatac ctacagatga cgatttaata ttagaaggct acccactatg
1601 gttaatgtta tatggataca catcttttct ataccaagtt aaagctgata
1651 aaaacccatt ctcctcttca ctaattgttg taaaatcctc agcattacaa
1701 agagtttttg gtacagacac aacaggctgg tatccactta tagacaaatc
1751 atttatggat ggcaaaggcc caggaaacac agatcccata ctactacaca
1801 gaaagtactg gtatccatca ctatatggtc aaagagatag catatcacaa
1851 ttagttaatt gtggacccta tgtaccaaaa tacaatgaaa ctaaaaacag
1901 cacatggcaa tgtaattata aatatacctt ttactttaag tggggaggcc
1951 actacccacc agaacaagaa gcagaaaatc ctgaaaaaaa gaacatctat
2001 cctgtgcccg ataaacaaca ggaaacaata tcaattgcag accctatttc
2051 agaaaagtat gacacagtct ttagatcctg ggactacaga aggggtagcc
2101 ttacaagaac agctattaaa agaatgcagg aaaacctcga atctgatgaa
2151 tctctatcaa cagattcagc aggctgctcc tcaaagaaaa agaaaaaata
2201 cctacccaca ctccaagacc cgaaaaaaga aaacaaagag atccagaaat
2251 gtctcctctc actctgcgaa gaaaatacat ggcaagagcc accacaagac
2301 tccaacatcc tccagctcct acagcagcag caccagcagc agcagtccat
2351 caagcagaac ctcctaacat taattgcaga cctgaaagca aaacagagaa
2401 atcttctgca ccaaacaggg tacctcgctt aactagattt aaacccggct
2451 ttgaaagaga aacagaaaat gaactagcac aagcatttaa aagaccccct
2501 agaatgttta aagaagacgc agctttttat ccatggctac cccgctttac
2551 accacttgtt aactttcacc ttaattttaa attctaggcc tacaatgtac
2601 acttagcagt ggatgtttaa taaagtttgc accaaaaaaa aaaaaaaaaa
2651 ataaaaaatt gcaaaaattc ggcgctcgcg cgcgctgcgc gcgcgcgagc
2701 gccgtcacgc gccggcgctc gcgcgccgcg cgtatgtgct aacacaccac
2751 gcacctagat tggggtgcgc gcgtagcgcg cgcaccccaa tgcgccccgc
2801 cctcgttccg acccgcttgc gcgggtcgga ccacttcggg ctcggggggg
2851 cgcgcctgcg gcgctttttt actaaacaga ctccgaggcg ccatttggcc
2901 cccctaagct ccgcccccct tatgaatact cataaaggaa accacaaaat
2951 tagaattgcc gaccacaaac tgccatatgc taattacttc cccttttaca
3001 tagtaaaaag gggaagtggg ggggcagagc ccccccacac cccccgcggg
3051 gggggcagag ccccccccgc acccccccta cgtcactaac cacgcccccg
3101 ccgccatctt gggtgaggca gggcgggggc taaaatggcg ggacccaatc
3151 actttatact ttcactttcc aattaaaaca cgccacgtca cacacaag