Sequence of DPV Torque teno midi virus-MDJHem5
Torque teno midi virus DNA, complete genome, isolate: MDJHem5.
ACC No: AB303555
Dated: 2008-12-16 | Length: 3205 | CRC: 444897181
ID AB303555; SV 1; circular; genomic DNA; STD; VRL; 3205 BP.
XX
AC AB303555;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJHem5.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3205
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3205
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJHem5"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(220. .566,2164. .2575)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLW5"
FT /protein_id="BAF76086.1"
FT /translation="MSKFYKPSYYNQETKEQLWTTNIQDFHDSFCSCTTAYAHLLDIIF
FT PEGHKDRNHSIFYIIKRDQQCLSGGDAEENIGGAADLPGPSTEGIKEEEKDPFADANLE
FT ELIAAATDAEKRNKPKKRKESGHLFTPPRRKEQKNQDMSPATLQRKYLPRRGDTRKPTQ
FT PHQAAARAAKTAQAQPPNFDNRHERETASTTTSDRHFRVKPFVTQFEIETERELSKIFK
FT RPPRTYQNDPPFYPWLPPEPRVNFNLNFKF"
FT CDS join(220. .566,1935. .2358)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VLW6"
FT /protein_id="BAF76087.1"
FT /translation="MSKFYKPSYYNQETKEQLWTTNIQDFHDSFCSCTTAYAHLLDIIF
FT PEGHKDRNHSIFYIIKRDQQCLSGGDAEENIGGAADLPGPSTEGIKEEEKDPFADANLE
FT ELIAAATDAEKSGEAPTLQTTLLKTQKPSQHMMFPITCNKLYKLGTQPNKSQKQFSMTG
FT TIDEDSLHQQLLAECNKTSNLIHLSQLIQKQTKKKEREWTPLYTTPKKRAKKSRHVSSN
FT SAKKVPSKKRRHQKTYSTSSSSSTSSKDSSSTTS"
FT CDS 220. .570
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLW7"
FT /protein_id="BAF76088.1"
FT /translation="MSKFYKPSYYNQETKEQLWTTNIQDFHDSFCSCTTAYAHLLDIIF
FT PEGHKDRNHSIFYIIKRDQQCLSGGDAEENIGGAADLPGPSTEGIKEEEKDPFADANLE
FT ELIAAATDAEKR"
FT CDS 414. .2423
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VLW8"
FT /protein_id="BAF76089.1"
FT /translation="MPFWWGRRRKYWWGRRFTRPKYRRYQRRRKRPIRRRKPRRTYRRR
FT YRRRKKVRRKRKTLLVRQWNPDSILTCKIKGFLDILMGADGNQYQCYTQNRYSMPPPKH
FT PCGGGFSVDRFTLQWLYDQWRLRQNIWTKPNTYKDLCRFIVAKITLYRHKTTDFIVQYS
FT RQPPFLIDKWTYMQYHPYMLLQSKHTKIIPSEQTNPKGRLKKKLIIRPPKQMLSKWFFQ
FT RQFATADLFQLVTAACSLNYPRLGCCNENRTLTLYYINPYFYQYSDWGQVKEHANYYKP
FT YNSIADLEFWSGNTKNPTKYKPKDEIEKATDPPSTAKYYASINYNTGYFSTKVLNAFKV
FT MVNSKESKPLPLGVARYNPVEDDGKGNEIWVASIHSNAYAKPAEDNLNFNGYPLWLAFW
FT GYWSYLQKIKDKSFFALHYFVVKSPYIYTAQTESTKNFFPIIDWAFIQGKDPYDGYLTS
FT TDKSLWYPTALRQIVTINNICKLGPYVPKYENDRLSTWELPIKYNFTFKWGGPHIADHI
FT VENPKTQPTYDVPDHLQQTVQIGDPTKQKPETIFHDWDYRRGFLTSTAISRMQQNLESD
FT SSLSTDSETNQKKGKRVDTSLHHPEEKSKKIKTCLQQLCKESTFQEEETPENLLNLIKQ
FT QHEQQRQLKHNLLTLITDMREKQHLLQLQTGIFE"
XX
SQ Sequence 3205 BP; 1137 A; 777 C; 585 G; 706 T; 0 other;
ab303555 Length: 3205 16-DEC-2008 Type: N Check: 9834 ..
1 aggtggagtt accaaaccta tataagtaac tacactgacg aatggctgag
51 tttaccccgc tagacggtgc agggaccgga tcgagcgcag cgaggaggtc
101 cccggctgcc caagggcggg agcccgaggt gagtgaaacc accgaggtct
151 aggggcaatt cgggctaggg cagtctagcg gaacgggcaa gaaacttaaa
201 tatacctctt ttttaataga tgtccaagtt ttacaaacca agctactaca
251 atcaagaaac taaagaacaa ctgtggacta caaacattca agactttcat
301 gattcttttt gttcgtgcac aacagcttat gcacacctat tggatataat
351 atttccagaa ggacacaaag acaggaatca ttctattttt tacattatta
401 aaagagatca acaatgcctt tctggtgggg acgcagaaga aaatattggt
451 ggggccgcag atttaccagg cccaagtaca gaaggtatca aagaagaaga
501 aaaagaccca ttcgcagacg caaacctaga agaacttatc gccgccgcta
551 cagacgcaga aaaaaggtaa gaagaaaaag aaaaacttta cttgttagac
601 aatggaaccc agactctata cttacctgta aaattaaagg attcttagat
651 attttaatgg gggctgatgg aaaccaatat caatgctata cacaaaacag
701 atactccatg cctccaccaa aacacccttg tggaggaggt ttttcagtag
751 atagatttac tttacaatgg ttatatgatc aatggagact tagacaaaat
801 atatggacca agccaaacac atacaaagac ctttgcagat tcatagtagc
851 taagattacc ttatacagac ataaaacaac agattttata gtacaataca
901 gcagacagcc accttttctt atagataaat ggacatacat gcagtatcac
951 ccatacatgt tactacaaag caaacatact aaaattatac caagtgaaca
1001 aactaacccc aagggcagac ttaaaaaaaa attaattatt agaccaccaa
1051 agcaaatgct ttctaagtgg ttttttcaaa gacaatttgc cacagcagat
1101 ttatttcaat tggtaactgc agcctgtagc ttaaactatc caagactagg
1151 ctgctgtaat gaaaacagaa ctttaacctt atactatatt aatccttact
1201 tttaccaata ttcagactgg ggacaagtaa aagaacacgc aaactattac
1251 aagccataca acagtatagc tgacctagaa ttctggtcag gaaacacaaa
1301 aaaccccact aaatacaaac ccaaagatga gatagaaaaa gcaacagatc
1351 ctccatcaac tgcaaaatac tatgcatcca ttaactacaa cactggctac
1401 ttttcaacta aagttttaaa tgcatttaaa gttatggtaa attccaaaga
1451 atctaaacca cttccactag gagtagctcg atacaaccca gtagaagatg
1501 atggtaaagg aaatgaaatt tgggtagcct ctatacatag caatgcctat
1551 gctaaaccag ctgaagataa ccttaatttt aatggttatc ccctatggct
1601 agcattttgg ggatactgga gctacctcca aaaaattaaa gacaaatcct
1651 tttttgcttt acattacttt gtagttaaaa gcccctatat atacactgcc
1701 caaacagaga gcaccaaaaa cttctttcca attattgact gggcttttat
1751 acaaggcaaa gatccatatg atggctacct aaccagcaca gataaatcct
1801 tatggtaccc tacagcacta agacaaatag ttaccattaa taatatatgc
1851 aaactaggac catatgtacc taaatatgaa aatgatagac taagcacatg
1901 ggaactacct attaaataca attttacttt taagtgggga ggcccccaca
1951 ttgcagacca cattgttgaa aacccaaaaa cccagccaac atatgatgtt
2001 cccgatcacc tgcaacaaac tgtacaaatt ggggacccaa ccaaacaaaa
2051 gccagaaaca attttccatg actgggacta tagacgagga ttccttacat
2101 caacagctat tagcagaatg caacaaaacc tcgaatctga ttcatctctc
2151 tcaactgatt cagaaacaaa ccaaaaaaaa ggaaagagag tggacacctc
2201 tttacaccac cccgaagaaa agagcaaaaa aatcaagaca tgtctccagc
2251 aactctgcaa agaaagtacc ttccaagaag aggagacacc agaaaaccta
2301 ctcaacctca tcaagcagca gcacgagcag caaagacagc tcaagcacaa
2351 cctcctaact ttgataacag acatgagaga gaaacagcat ctactacaac
2401 ttcagacagg cattttcgag taaaaccatt tgtaacacaa tttgaaatag
2451 aaacagaacg tgaactaagc aaaatattta aaagaccacc cagaacttac
2501 caaaatgacc ctccctttta cccctggtta ccacccgaac cccgagtaaa
2551 ctttaacctt aattttaaat tctaggccaa caatgtacac ttagtaaagc
2601 atgtttaata aagtttgcac cccaaaaaaa ttgtaaaacc aaaaaaagaa
2651 aaaaaaataa aaaattgcaa aaattcggcg ctcgcgcgcg ctgcgcgcgc
2701 gcgagcgccg tcacgcgccg gcgctcgcgc gccgcgcgta tgtgctaaca
2751 caccacgcac ctagattggg gtgcgcgcgt agcgcgcgca ccccaatgcg
2801 ccccgccctc gttccgaccc gcttgcgcgg gtcggaccac ttcgggctcg
2851 ggggggcgcg cctgcggcgc ttatttacta aacagactcc gagtcgccat
2901 ttggcccccc ctaagctccg cccccctcat gaatattcat aaaggaaacc
2951 acaaaattag aattgccgac cacaaactgc catatgctaa ttagttcccc
3001 ttttacacag taaaaagggg aagtgggggg gcaaagcccc cccacacccc
3051 ccgcgggggg ggcagagccc cccccgcacc ccccctacgt cacaggccac
3101 gcccccgccg ccatcttggg tgcggcaggg cggaggctaa aatggcggga
3151 gccaatgaat tcatactttc actttccaat taaaacccgc cacgtcacaa
3201 caaag