Sequence of DPV Torque teno midi virus 8
Torque teno midi virus DNA, complete genome, isolate: MDJN1.
ACC No: AB303558
Dated: 2008-12-16 | Length: 3223 | CRC: 252243087
ID AB303558; SV 1; circular; genomic DNA; STD; VRL; 3223 BP.
XX
AC AB303558;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJN1.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3223
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the INSDC.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3223
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJN1"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(222. .586,2202. .2598)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLX7"
FT /protein_id="BAF76098.1"
FT /translation="MQHLCSKDFIKPCKYNEETKNQLWMSELADSHDIWCSCDTPFAHL
FT LASIFPPGHQDRGKTIQDILERDYKQLCHSGGPAERSHGILTGTATGADIKEEDGLEGD
FT AEEFLMAAAAAAAEEKERNSKEKGKDNSRNSLLPRKDGRNAELSPLTLRRKYMPRTRKP
FT PAAHPSPAAAAAKAQVKHPQTPNGFETPTTNSTTSHRHRMTEFKPGFERETEEQLAQAF
FT KRPVRKFKEDPPFYPWLPITPIVYFNLNYKC"
FT CDS join(222. .586,1970. .2393)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VLX8"
FT /protein_id="BAF76099.1"
FT /translation="MQHLCSKDFIKPCKYNEETKNQLWMSELADSHDIWCSCDTPFAHL
FT LASIFPPGHQDRGKTIQDILERDYKQLCHSGGPAERSHGILTGTATGADIKEEDGLEGD
FT AEEFLMAAAAAAAEEKESGEVHMYQTSLCKIPKHKESTLCPILSHKQYKLATRSNKPVK
FT QCLETGITGGGLLQQQLLKECQNTSKLIHLSNLMTQKLQRKRKRQQQKFPTTKKRRKKC
FT RVVSSHSSKKVHAKNQKTSSSSSFTSSSSSKSSSQTSSNS"
FT CDS 222. .590
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLX9"
FT /protein_id="BAF76100.1"
FT /translation="MQHLCSKDFIKPCKYNEETKNQLWMSELADSHDIWCSCDTPFAHL
FT LASIFPPGHQDRGKTIQDILERDYKQLCHSGGPAERSHGILTGTATGADIKEEDGLEGD
FT AEEFLMAAAAAAAEEKER"
FT CDS 437. .2446
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VLY0"
FT /protein_id="BAF76101.1"
FT /translation="MPFWWARRKKPWYSNWNRYRRRYKRRRWPRRRRRRIPYGRRRRRR
FT RRKRKVRRKRQRIIVKQWQPESIVKCEIKGLGCLVAGAQGRQPFCYTNSKYEYPQPKAP
FT GGGGFGAELFTLQYLYDEWVARRNIWTKTNDYKDLVRFTGATFYLYKHPTTDFIFNYNN
FT QPPFLLEKDFYNDLHPQMLLLAKHHRVIPSRQRKPLGKPYIKVKIKPPKQMLTEWFFQQ
FT DFATQGLFSIHAAAANMQWAYYNPDQQSRCLTLYSLNIKFFANTDWSATHTGTQMYFPY
FT NAWPHTKGLTFWTIDSKGNKTPHSIKPQNYNQSVNYLQGFFSQYVLQAQKITDADDNVP
FT AKYEQYSAAMSTLLIAAFRYNPEEDTGQGNVVWLTSTLSNTHWERPQLSDLVIVGKPLW
FT LSFYGFESFIQKTKHDKGWLLSGFYVCKCPYLKTLSATTQTTFAFIDLDFIQGKLPYGE
FT TITSQKKALWYPNVENQVNTVTNLVQCGPYIPKYAFRDESTWELTYKYIFYFKWGGPYV
FT SDQPVQNPKTQGKYPVPDTVSQAIQISNPLKQTCKAMLRDWDYRRGIITTTALKRMSEH
FT LQTDSSVQSDDSETPKKKEKTTAEIPYYQEKTEEMQSCLLSLFEESTCQEPENLQQLIL
FT HQQQQQQKLKSNILKLLMDLKHQQRILQHHTGIE"
XX
SQ Sequence 3223 BP; 1115 A; 767 C; 617 G; 724 T; 0 other;
ab303558 Length: 3223 16-DEC-2008 Type: N Check: 10 ..
1 aggtggagac tttaaaacta tataaccatg tgatgtgacg aatggctgag
51 tttaccccgc tagacggtgc aggaaccgga tcgagcgcag cgaggaggtt
101 cccggctgcc caagggcggg agcccgaggt gagtgaaacc accgaggtct
151 aggggcaatt cgggctaggg cagtctagcg gaacgggcaa gaaacttaaa
201 actatttact ttattataga tatgcaacac ctatgttcga aagacttcat
251 aaaaccttgc aaatataatg aagagacgaa gaaccaacta tggatgtctg
301 aacttgctga tagtcatgat atatggtgca gttgtgatac tccatttgct
351 caccttcttg cttccatttt tccacctggt catcaagaca ggggcaaaac
401 tattcaagac attctagaaa gagattataa acaactatgc cattctggtg
451 ggcccgcaga aagaagccat ggtattctaa ctggaaccgc tacaggcgca
501 gatataaaag aagaagatgg cctagaagga gacgcagaag aattccttat
551 ggccgccgcc gccgccgccg cagaagaaaa agaaaggtaa gaagaaaaag
601 acaaagaata attgttaaac aatggcaacc tgaatctata gttaaatgtg
651 agattaaagg tttagggtgt ttagtagctg gggcacaagg cagacaacca
701 ttttgctata ctaatagtaa atatgaatac ccacaaccaa aagccccagg
751 cggcggtggc tttggagctg aactatttac actccaatac ttatatgatg
801 agtgggtagc cagaagaaat atatggacta aaactaatga ctacaaagac
851 ttagttagat ttacaggagc tacattctac ctatacaaac accctacaac
901 agactttatt tttaactaca acaatcaacc ccctttctta ctagaaaaag
951 acttttacaa tgatttgcac ccacaaatgt tattactggc aaagcatcac
1001 agagtaatac ctagtagaca aagaaaacca ctaggtaaac catatataaa
1051 agtaaagatt aaaccaccta aacaaatgct aactgaatgg ttttttcaac
1101 aagattttgc tacacaaggc ttattttcaa tacatgcagc cgcagcaaac
1151 atgcaatggg catattataa tccagaccaa caaagtagat gtctaaccct
1201 atactcatta aatatcaaat tctttgctaa cacagactgg agtgcaacac
1251 acacaggcac acaaatgtac tttccataca atgcatggcc tcacacaaaa
1301 ggccttacat tttggacaat agactcaaaa ggtaataaaa caccacattc
1351 cattaaaccc cagaactaca atcaaagtgt aaattaccta caaggcttct
1401 tttctcaata tgtacttcaa gcacaaaaaa taacagacgc agatgacaat
1451 gttccagcta aatatgaaca atattcagca gcaatgtcta cattactaat
1501 agctgctttt agatataatc ctgaagaaga cacaggccag ggcaatgtag
1551 tatggctaac tagcacactt tccaacacac actgggaaag accacaacta
1601 tcagacctag ttattgtagg taagccacta tggctatcat tctatggatt
1651 tgaaagcttt atacaaaaaa caaaacatga taaaggatgg ctactatcag
1701 gcttttatgt atgcaaatgc ccctacctta aaactctttc agctacaaca
1751 caaacaactt ttgcttttat agatttagat tttatacaag gcaaactacc
1801 ttatggagaa actatcacaa gccaaaagaa agcactatgg tacccaaatg
1851 ttgaaaatca agtcaacact gtaactaatt tagtacagtg tggaccatac
1901 atacctaaat atgcatttcg agatgaaagc acatgggaac taacatacaa
1951 atatattttt tattttaagt ggggaggtcc atatgtatca gaccagcctg
2001 tgcaaaatcc caaaacacaa ggaaagtacc ctgtgcccga tactgtctca
2051 caagcaatac aaattagcaa cccgctcaaa caaacctgta aagcaatgct
2101 tagagactgg gattacagga gggggattat tacaacaaca gctcttaaaa
2151 gaatgtcaga acacctccaa actgattcat ctgtccaatc tgatgactca
2201 gaaactccaa agaaaaagga aaagacaaca gcagaaattc cctactacca
2251 agaaaagacg gaagaaatgc agagttgtct cctctcactc ttcgaagaaa
2301 gtacatgcca agaaccagaa aacctccagc agctcatcct tcaccagcag
2351 cagcagcagc aaaagctcaa gtcaaacatc ctcaaactcc taatggattt
2401 gaaacaccaa caacgaattc tacaacatca cacaggcata gaatgactga
2451 atttaaacct ggatttgaga gagaaactga agaacagtta gcacaagcat
2501 ttaaaagacc agtaagaaaa tttaaagaag atcccccttt ttacccctgg
2551 ttaccaataa cacccattgt atactttaac ctcaactata agtgctaggc
2601 cgacactgtt cacttagcgg tgtttgttta ataaagtttg caccccaaaa
2651 aaattgtaaa aaaaaaaaaa aaaaataaaa aactgcaaaa attcggcgct
2701 cgcgcgcgct acgcgcgcgc gagcgccgtc acgcgccggc gctcgcgcgc
2751 cgcgcgtatg tgctaacaca ccacgcacct agattggggt gcgcgcgtag
2801 cgcgcgcacc ccaatgcgcc ccgccctcgt tccgacccgc ttgcgcgggt
2851 cggaccactt cgggctcggg ggggcgcgcc tgcggcgctt ttttactaaa
2901 cagactccga gtcgccattt ggccccccct aagctccgcc ccccttatga
2951 atattcataa aggaaaccac aaaatttgaa ttgccgacca caaactgcca
3001 tatgctaatt agttcccctt ttacacagta aaaaggggaa gtgggggggc
3051 atagcccccc cacacccccc gcgggggggg cagagccccc cccgcacccc
3101 ccctacgtca caaaccacgc ccccgccgcc atcttgggtg cggcaaggcg
3151 ggggctaaaa tggcgggacc caatcatttt atacttttac tttccaatta
3201 aaacatgcca cgtcacaaca aag