Sequence of DPV Torque teno midi virus 9
Torque teno midi virus DNA, complete genome, isolate: MDJN2.
ACC No: AB303559
Dated: 2008-12-16 | Length: 3187 | CRC: 738538461
ID AB303559; SV 1; circular; genomic DNA; STD; VRL; 3187 BP.
XX
AC AB303559;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJN2.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3187
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3187
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJN2"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(218. .585,2135. .2558)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLY1"
FT /protein_id="BAF76102.1"
FT /translation="MTAYYNFARKTPYNNCTHEQLWISSFNDSHDAFCGCTKPVTHMLS
FT ILFPEGHRDLDLTIRQILQREKEDTICLFGGTDERDGGEAQEDPGTKEKDIPDATEEEF
FT TKIDVEDLLAAAADADTPRFRVKPTSQEKEKDNKRATIPTKRERRAPEMSPLTLRRKYL
FT PRNPTNTKPARAHPAAAAATATTQVQHSQNHLRTQAAAATTRSTNRTSTLTPFKPGFET
FT ETELQLCIAFKRYPRKYKEDPPLYPWLPPEPRVNFNLNFKC"
FT CDS join(218. .585,1912. .2380)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VLY2"
FT /protein_id="BAF76103.1"
FT /translation="MTAYYNFARKTPYNNCTHEQLWISSFNDSHDAFCGCTKPVTHMLS
FT ILFPEGHRDLDLTIRQILQREKEDTICLFGGTDERDGGEAQEDPGTKEKDIPDATEEEF
FT TKIDVEDLLAAAADADTPSGEVPTLKKHKLQIPASKVHMLCPVSSKKNYKSLIQQSRKQ
FT QQCSTAGTTGEDLLHSQLLKEFAKTNQLIQISKQVQSQANLSRKRKRQQKSYHTHQKRK
FT KSSRNVSSHSTKKVSPKKSHKHKTCKSSSSSSSSNSNNSSTTFSKSSQNSSSSSNY"
FT CDS 218. .589
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLY3"
FT /protein_id="BAF76104.1"
FT /translation="MTAYYNFARKTPYNNCTHEQLWISSFNDSHDAFCGCTKPVTHMLS
FT ILFPEGHRDLDLTIRQILQREKEDTICLFGGTDERDGGEAQEDPGTKEKDIPDATEEEF
FT TKIDVEDLLAAAADADTPR"
FT CDS 430. .2406
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VLY4"
FT /protein_id="BAF76105.1"
FT /translation="MPFWWNRRKRWWRGARRPWYKRKRYTRRYRRRIYKNRRRRPTRRR
FT RRRRHTKVRRKRQTIPVRQWQPERIVRCKIKGISVIVLGGEGKQFQCYTNEATTWTPLR
FT TPGGGGFGVEKYTLSHLYDQYKFGNNIWTKTNILTDLVQYLGCKFVFYRHQYVDFIVKY
FT SRNLPMTIEKLTYPHTHPQALLLSRHKRIIPSRVTKPHGKNRVIIKIKPTRVVLKKWFF
FT QETFDTTGLCSIYAAACDLNYPHIGATSQNQIITLFGLNQSFYSKGNWGAVVQTGYQPY
FT PSVTTFTYKTAATKQVETFNKPTTYEASVSYTTGWFNPKLMQLTEYVTPQQLAKPVLAF
FT RYNAQLDNGKGNSVWFKSILTEDFSKPKVDSDLIISDMPIWQALYGFTDFIKAVKPDPN
FT FLASYILLIETRFVEPFSSHATGNYWIPIDSSFVTGKGPYNTPIGDYTKTKWFPTVKNQ
FT QESINAFVKAGPYIPRLQDEKKSTWELHAFYQFYLKWGGTYTEETQVADPSKQGTYVMP
FT SFIQEKLQIINPAKQKAAAMLHCWDYRRGLITQSAIKRICEDQPTDTDFQTGSESSQPL
FT KKKKKTTKELPYPPKEKEELQKCLLSLYEESISQEIPQTQNLQELIQQQQQQQQQLKYN
FT ILKIISELKQQQQLLGLQTGLVL"
XX
SQ Sequence 3187 BP; 1142 A; 750 C; 604 G; 691 T; 0 other;
ab303559 Length: 3187 16-DEC-2008 Type: N Check: 5280 ..
1 gggtggagac ttttaaacta tataactaag tggggtggcg aatggctgag
51 tttaccccgc tagacggtgc agggaccgat cgagcgcagc gaggaggacc
101 acagctgccc aagggcggga gcccgaggtg agtgaaacca ccgaggtcta
151 ggggcaattc gggctagggc agtctagcgg aacgggcaag aaacttaaaa
201 tatatgttat tttacagatg acagcctact acaactttgc tagaaaaaca
251 ccatacaaca actgtacaca tgaacaactg tggatttcca gttttaatga
301 tagccatgat gctttttgtg gatgcaccaa accagtaaca catatgctta
351 gtattttatt tccagaaggc catagagatt tagaccttac tatcagacaa
401 attctacaaa gagaaaaaga agacacaata tgcctttttg gtggaacaga
451 cgaaagagat ggtggagagg cgcaagaaga ccctggtaca aaagaaaaag
501 atataccaga cgctacagaa gaagaattta caaaaataga cgtagaagac
551 ctactcgccg ccgccgcaga cgcagacaca ccaaggtaag aagaaaacga
601 caaactatac ctgtaagaca atggcaacca gaaagaatag ttagatgtaa
651 aataaaaggc atttctgtaa ttgtgctagg aggtgaaggc aagcagttcc
701 aatgctatac aaatgaagct actacatgga ctcctttaag gactcctggt
751 gggggaggct ttggagtaga aaagtatact ttaagtcatt tatatgatca
801 atataaattt ggaaacaaca tatggacaaa gacaaatatt ttaacagact
851 tagtacaata cttaggatgc aagtttgtat tttacagaca tcagtatgtt
901 gactttatag taaaatactc cagaaactta ccaatgacaa tagagaaact
951 tacataccca cacacacatc ctcaagcact attgttatca agacataaaa
1001 gaataatacc aagtagagta actaagccac atggaaaaaa cagagtgata
1051 attaaaatta aacctaccag agttgtactt aaaaaatggt ttttccaaga
1101 aacatttgac actacaggcc tctgtagcat atatgctgct gcctgtgacc
1151 taaactaccc acacatagga gctacatcac aaaatcaaat aattacactt
1201 tttggcctaa atcaatcatt ttacagcaaa ggaaattggg gagcagttgt
1251 acagacaggc taccaaccat acccttcagt tactaccttt acctataaaa
1301 cagcagcaac taaacaagta gaaacattta ataaaccaac aacctatgaa
1351 gcgtctgtta gctacacaac aggctggttt aacccaaaac taatgcagtt
1401 aacagaatat gtaacaccac aacagctagc caaacctgta ctagcattta
1451 gatacaatgc acaactagac aatggcaaag gtaactctgt atggtttaaa
1501 agcattttaa cagaagactt ttctaaaccc aaagtagact ctgacttaat
1551 tatatcagac atgcccattt ggcaagcatt atatggtttt actgacttca
1601 ttaaagctgt aaaaccagat cccaattttt tagcttctta cattttacta
1651 atagaaacaa gatttgtaga accatttagc tctcatgcaa caggtaatta
1701 ctggatcccc atagacagct cctttgtcac aggaaaagga ccatataaca
1751 caccaatagg agactataca aaaaccaaat ggtttcctac agtaaaaaat
1801 caacaagaat ccattaatgc atttgtaaaa gcaggcccat acataccaag
1851 acttcaagat gaaaaaaaaa gcacatggga gttacatgcc ttttatcaat
1901 tttatttaaa gtggggaggt acctacactg aagaaacaca agttgcagat
1951 cccagcaagc aaggtacata tgttatgccc agtttcatcc aagaaaaact
2001 acaaatcatt aatccagcaa agcagaaagc agcagcaatg ctccactgct
2051 gggactacag gagaggactt attacacagt cagctattaa aagaatttgc
2101 gaagaccaac caactgatac agatttccaa acaggttcag agtcaagcca
2151 acctctcaag aaaaagaaaa agacaacaaa agagctacca tacccaccaa
2201 aagagaaaga agagctccag aaatgtctcc tctcactcta cgaagaaagt
2251 atctcccaag aaatcccaca aacacaaaac ctgcaagagc tcatccagca
2301 gcagcagcag caacagcaac aactcaagta caacattctc aaaatcatct
2351 cagaactcaa gcagcagcag caactactag gtctacaaac aggactagta
2401 ctttgacacc attcaaacca ggctttgaaa ctgaaacaga actacagctt
2451 tgcattgctt ttaaaagata tcccagaaaa tataaagaag accccccact
2501 ttacccctgg ttacctccag aacccagagt taactttaac ctcaatttta
2551 aatgctaggc atacaatgtt cacttagtaa agcatgttta tataagttgt
2601 acccccaaaa aaacaataaa aaaaaaaaaa aaaaaaaaaa taaaaaattg
2651 caaaaattcg gcgctcgcgc gcgctgcgcg cgcgcgagcg ccgtcacgcg
2701 ccggcgctcg cgcgccgcgc gtatgtgcta acacaccacg cacctagatt
2751 ggggtgcgcg cgtagcgcgc gcaccccaat gcgccccgcc ctcgttccga
2801 cccgcttgcg cgggtcggac cacttcgggc tcgggggggc gcgcctgcgg
2851 cgcttaatta ctaaacaaac tccgagttgc catttgcccc ccctaagctc
2901 cgcccccctc atgaatattc ataaaggaaa ccacaaaatt agaattgccg
2951 accacaaacg gccatatgct aattagttcc ccttttacac agtaaaaagg
3001 agaagtgggg gggcagagcc cccccacacc ccccgcgggg ggggcagagc
3051 cccccccgca ccccccctac gtcacaagcc acgcccccgc cgccatcttg
3101 ggtgcggctg cgcggagaca aaaatggcgg gacccaataa atttatagtt
3151 ttactttcca atcacatatt gccacgtcac tacaaag