Sequence of DPV Torque teno midi virus 10
Torque teno midi virus DNA, complete genome, isolate: MDJN14.
ACC No: AB303560
Dated: 2008-12-16 | Length: 3175 | CRC: -1884720774
ID AB303560; SV 1; circular; genomic DNA; STD; VRL; 3175 BP.
XX
AC AB303560;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJN14.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3175
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3175
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJN14"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(219. .577,2148. .2559)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLY5"
FT /protein_id="BAF76106.1"
FT /translation="MSRFYTQTKYNGATLNQMWMSMIADSHDIHCDCKKPFAHLLDNIF
FT PEGHTDRNKTVAHIINRDYKECLSGGEEEDDPGIPVGASAATAAGDTEIKLEEHLEEDA
FT EEIEKLLAAAEENYIRWRNTKEKEKDNLRAQKPTRRDQRSPKLHPLTMPNRNIGRGRPQ
FT QPPAAHPQAKAQAAAAQAQHLSSINRPQNQAKLFEATNRQFTVEPFKPGFEIETEQQLA
FT IAFCRPPRTYKNDPPFYPWLPPTPLVNFNLNYKC"
FT CDS join(219. .577,1925. .2342)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VLY6"
FT /protein_id="BAF76107.1"
FT /translation="MSRFYTQTKYNGATLNQMWMSMIADSHDIHCDCKKPFAHLLDNIF
FT PEGHTDRNKTVAHIINRDYKECLSGGEEEDDPGIPVGASAATAAGDTEIKLEEHLEEDA
FT EEIEKLLAAAEENYISGEALKLETQQLMIPKPKDKRPLTIQCPAQYKYLTHSKIKQNPF
FT YTPGTSEGALLQKELLKECAKTSRLIQISTQMEKHQRKRKRQPASSETHKKRSKKSKAA
FT SSHYAKQKHRKRKTPTTSSSSSTSKSSSSSSSSTTS"
FT CDS 219. .581
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLY7"
FT /protein_id="BAF76108.1"
FT /translation="MSRFYTQTKYNGATLNQMWMSMIADSHDIHCDCKKPFAHLLDNIF
FT PEGHTDRNKTVAHIINRDYKECLSGGEEEDDPGIPVGASAATAAGDTEIKLEEHLEEDA
FT EEIEKLLAAAEENYIR"
FT CDS 416. .2407
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VLY8"
FT /protein_id="BAF76109.1"
FT /translation="MPFWWRRRRRPWYTRWGQRRYRRRRYRNKTRRTFGRRRRRNRKAP
FT RRRRRKLHKVRRKKKFLKLVQWQPDRIRKCTIKGRGTLVMGAHGRQMICFTNVKDRLTP
FT SRAPAGGGFGVERITLAHLYEEWKARNNVWTATNENTDLGRYTGCKISFYRHLDTDFII
FT KYSRNPPFNLEKYSYMYMQPQELLLGKHKRILLSKKTNPKGKLKTTLKIGPPKLLTNKW
FT LLQSELAKQDLVEISAAAASFTYPTIGCCNENRILNLYSINTEFYKDAHWMQAHAGTNY
FT YKPYSTIPSDLKFHYKTQSGGESAINGPDSKEKALTLEGGWFQPKILGAYKITKGSTIT
FT QYGELPMVLLRYNPAADQGPGNIVTIIDLVSGQWQGPYPDDYTIKDVPLWLALNGYPNY
FT VMQKSGDKGILKHKLICVKSAALYRLPTVSTQKIFPIIGVKFVNGKPPYDQPLTSDMSK
FT AWYPIYEHQQEPLNDIVCCGPLVPKFYNQTNSTWELQYFYRFYFKWGGPEIGDPTVDDP
FT KTKGQATTDYTMPRSIQVFNPLKNKTESILHPWDFRRGIVTKRALERMCQNLETDSNFY
FT PDGETPKKKKKTTCELRNPQEEIKEVQSCILSLCQTETSEEEDPNNLQQLIHKQKLKQQ
FT QLKHNILVLLTDLKTKQNSLRLQTGNLQ"
XX
SQ Sequence 3175 BP; 1129 A; 761 C; 620 G; 665 T; 0 other;
ab303560 Length: 3175 16-DEC-2008 Type: N Check: 8442 ..
1 gggtggagac tttaaaacta tataactaac tggggtggcg aatggctgag
51 tttaccccgc tagacggtgc agggaccgga tcgagcgcag cgaggaggtc
101 cccggctgcc caagggcggg agcccgaggt gagtgaaacc accgaggtct
151 aggggcaatt cgggctaggg cagtctagcg gaatgggcaa gaaacttaaa
201 acaatatttg ttttacagat gtcccgcttc tacactcaaa ctaaatataa
251 tggagctaca ttaaaccaaa tgtggatgtc tatgattgct gattcacatg
301 acattcactg tgattgtaaa aaaccttttg ctcatctact tgacaacata
351 tttccagaag gtcatacaga cagaaacaaa acagtagccc acatcattaa
401 cagagattat aaagaatgcc tttctggtgg agaagaagaa gacgaccctg
451 gtatacccgt tggggccagc gccgctaccg ccgccggaga tacagaaata
501 aaactagaag aacatttgga agaagacgca gaagaaatag aaaagctcct
551 cgccgccgca gaagaaaact acataaggta agaagaaaga aaaaattttt
601 aaaactagta caatggcaac cagacagaat aagaaaatgt actataaaag
651 gcagaggaac tttagtcatg ggagcccatg gcagacaaat gatatgcttt
701 accaatgtta aagacagact aacacctagt agagcaccag caggaggtgg
751 ctttggagta gagagaatta ctttagccca tctatatgaa gaatggaaag
801 ctagaaataa tgtctggact gcaactaatg aaaacacaga cctaggcaga
851 tatactggct gtaaaatatc tttttacaga cacctagaca cagactttat
901 aattaaatac agcagaaatc caccctttaa cttagaaaaa tattcataca
951 tgtacatgca gcctcaagag ctgctacttg gaaaacacaa aagaatttta
1001 ctaagtaaaa aaacaaatcc aaaaggcaaa ttaaaaacca ccttaaaaat
1051 agggccacct aaactactta caaataaatg gctactacaa tctgagttag
1101 ctaaacaaga cttagtagaa atttcagcag cagctgctag ctttacatat
1151 ccaactatag gctgctgtaa tgaaaacaga atacttaact tgtactccat
1201 aaacactgaa ttttacaaag acgcacactg gatgcaagca catgcaggca
1251 caaattacta caaaccatac tccacaatac caagtgattt aaaattccac
1301 tacaaaacac aatcaggagg agaaagcgct ataaacgggc ctgactcaaa
1351 agagaaagct ttaacattag aaggtggatg gtttcaacct aaaatattag
1401 gagcttacaa aatcacaaag ggaagcacca tcacacaata tggtgaatta
1451 ccaatggtgt tacttagata taatccagca gcagaccaag gcccaggcaa
1501 catagtaact atcattgact tagtgtctgg tcaatggcaa ggaccatatc
1551 ctgacgacta cacaataaaa gatgttcccc tatggctagc attaaatggc
1601 taccctaact atgtaatgca aaagtctggt gataaaggca tactaaaaca
1651 caaacttatt tgtgtaaaaa gcgcagcact atacagactg cctacagtaa
1701 gcactcagaa aatattccca ataattggag ttaaatttgt taatggtaaa
1751 cctccatatg atcaaccatt aacatctgac atgtccaaag catggtatcc
1801 tatatatgaa caccaacaag aaccactaaa tgatatagta tgctgtggcc
1851 ctttagtacc aaaattttac aaccaaacaa acagtacctg ggagttacaa
1901 tacttttatc gtttctactt taagtgggga ggccctgaaa ttggagaccc
1951 aacagttgat gatcccaaaa ccaaaggaca agcgaccact gactatacaa
2001 tgccccgctc aatacaagta tttaacccac tcaaaaataa aacagaatcc
2051 attttacacc cctgggactt cagaaggggc attgttacaa aaagagctct
2101 tgaaagaatg tgccaaaacc tcgagactga ttcaaatttc tacccagatg
2151 gagaaacacc aaagaaaaag aaaaagacaa cctgcgagct cagaaaccca
2201 caagaagaga tcaaagaagt ccaaagctgc atcctctcac tatgccaaac
2251 agaaacatcg gaagaggaag accccaacaa cctccagcag ctcatccaca
2301 agcaaaagct caagcagcag cagctcaagc acaacatctt agttctatta
2351 acagacctca aaaccaagca aaactctttg aggctacaaa caggcaattt
2401 acagtagaac catttaaacc aggatttgaa atagaaacag aacaacagct
2451 tgctatagct ttctgcagac ctcctagaac ttataaaaat gatcctccat
2501 tttacccttg gttaccacca acaccccttg taaactttaa ccttaactac
2551 aaatgctagg ccaacaatgt acacttagta aagcatgttt aataaagttt
2601 gcaccaaaaa aaaaaaaaaa aaaaaaaata aaaaattgca aaaattcggc
2651 gctcgcgcgc gctgcgcgcg cgcgagcgcc gtcacgcgcc ggcgctcgcg
2701 cgccgcgcgt atgtgcttac acaccacgca cctagattgg ggtgcgcgcg
2751 tagcgcgcgc accccaatgc gccccgccct cgttccgacc cgcttgcgcg
2801 ggtcggacca cttcgggctc gggggggcgc gcctgcggcg cttatttact
2851 aaacagactc cgagtcgcca tttggccccc ctaagctccg cccccctcat
2901 aaatattcat gaaggaaacc gcaaaattag aattgccgac cacaaactgc
2951 catatgctaa ttagttcccc ttttacacag taaaaagggg aagtgggggg
3001 gcaaagcccc cccacacccc ccgcgggggg ggcagagccc cccccgcacc
3051 ccccctacgt cacaaaccac gcccccgccg ccatgttggg tgcggcgggg
3101 cggagactaa aatagcggca cccaatcatt ttatactttc actttccaat
3151 taaaacatgc cacgtcacat acaag