Sequence of DPV Torque teno midi virus 11
Torque teno midi virus DNA, complete genome, isolate: MDJN47.
ACC No: AB303561
Dated: 2008-12-16 | Length: 3198 | CRC: 599424106
ID AB303561; SV 1; circular; genomic DNA; STD; VRL; 3198 BP.
XX
AC AB303561;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJN47.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3198
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3198
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJN47"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(219. .589,2160. .2580)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLY9"
FT /protein_id="BAF76110.1"
FT /translation="MSNYSANHFFKPTPYNNDTKNQMWMSMISDGHDCMCNCPSPFGHL
FT LASIFPPGHQDRFLTVEEIINRDIKECLFGGPDARDGGEAAAGPSTGVDTTIKREDPEE
FT DFTKENIEELIAAAEKASERCVTKENENITPREHTPMHQQRSRGSPRLSPESLRRKYLP
FT RNPRPAKHPATPPPAAAATAAHKAPASPAHQQLKEETKTNSTTNRNPRLTPFKPGFEQQ
FT TEQELAYAFKRPARKYKEDPPFYPWLPIATPIVNFHLNYKF"
FT CDS join(219. .589,1937. .2378)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VLZ0"
FT /protein_id="BAF76111.1"
FT /translation="MSNYSANHFFKPTPYNNDTKNQMWMSMISDGHDCMCNCPSPFGHL
FT LASIFPPGHQDRFLTVEEIINRDIKECLFGGPDARDGGEAAAGPSTGVDTTIKREDPEE
FT DFTKENIEELIAAAEKASESLEVHHYQKQKLKTLPHKELMRYPISNPKQYKSLTRKKTL
FT QLQPYTAGTLEEGTLQAELLKECAKTQKLIQISKQMCHQRKRKHHSKRTHSHASAKKQR
FT KSKTVSRVSTKKIPSKKSQTSKTSSNSSTSSSSNSSTQSSSFSSSSTT"
FT CDS 219. .593
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLZ1"
FT /protein_id="BAF76112.1"
FT /translation="MSNYSANHFFKPTPYNNDTKNQMWMSMISDGHDCMCNCPSPFGHL
FT LASIFPPGHQDRFLTVEEIINRDIKECLFGGPDARDGGEAAAGPSTGVDTTIKREDPEE
FT DFTKENIEELIAAAEKASER"
FT CDS 431. .2425
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VLZ2"
FT /protein_id="BAF76113.1"
FT /translation="MPFWWARRKRWWRGRRRPFYRRRYHYKKRRPRRRLYKRKHRRTYR
FT RRRKSFRKVRRKRRTLPLKQWQPETIRKCKVKGIGIHTLGVEGTQYRCYTANKYEYTIA
FT KQPSGGGFGVERYTLEYLYKEHKAGNNVWTTSNVNLDLVRYTGCRFIFWRHPHIDFVGV
FT YSRNYPMQLQKYTYPDTHPQQIMLAKHKFFIPSLLTKPHGKRYVKIKIKPPTQMSNKWF
FT FQEGFSDTGLVQIHTAACDLRYAHLGCCNTNQLASFLTLNTDFYQYAAWGNPKNPYIPT
FT EQDKWYRPYRIVEPVTEVEDVKGNKKTITTVFTPYTETITYNKGWFQPALLQAKQITKP
FT SQANPPLKGARYNPTLDTGENTAVWLTNVVNQSYYPPKTDLDLFVQGLPLWQLLLGFPD
FT WVRQKKKDPTFLQSYYLCFHCDAIEPKPGLHQVFIPVDYSFVQGKGPYDSLLSKWDNDH
FT WYPTLKHQLQTINSVVETGPFVPKLDTLKNSTWELYSTYTFYFKFGGASLPEAETKDPA
FT TQGTHEVPDKQSKAIQIINPKKNTAAAALHCWDFRRGHITSRAFKRMCENAETDSDFQA
FT DVSPKKTKTSLQENTLPCISKEAEEVQDCLQSLYEENTFQEIPDQQNIQQLLHQQQQQQ
FT QHTKLQLLQLINNLKKKQKLIQLQTGILD"
XX
SQ Sequence 3198 BP; 1117 A; 791 C; 593 G; 697 T; 0 other;
ab303561 Length: 3198 16-DEC-2008 Type: N Check: 9159 ..
1 aggaggagac ttttacacta tataactaag tgtactgacg aatggctgag
51 tttaccccgc tagacggtgc agagaccgga tcgagcgcag cgaggaggtc
101 tccggctgcc catgggcggg agcccgaggt gagtgaaacc accgaggtct
151 aggggcaatt cgggctaggg cagtctagcg gaacgggcaa gaaacttaaa
201 tacacttttg ttttacagat gagcaactat tctgctaatc acttctttaa
251 acctacacca tacaacaatg ataccaaaaa tcaaatgtgg atgtctatga
301 tctctgatgg ccacgactgc atgtgcaact gccctagtcc ttttggccat
351 ttgcttgctt ctatatttcc tcctggtcat caagaccgct ttctcacagt
401 tgaagaaatt attaacagag atattaagga atgccttttt ggtgggccag
451 acgcaagaga tggtggagag gccgccgcag gcccttctac aggcgtagat
501 accactataa aaagagaaga cccagaagaa gactttacaa aagaaaacat
551 agaagaactt atcgccgccg cagaaaaagc ttcagaaagg taaggagaaa
601 aagaagaacc ttacctctta aacaatggca accagagaca ataagaaaat
651 gtaaagttaa aggcataggc attcacacct taggagtaga aggtacccaa
701 tacagatgtt acacagctaa caaatatgaa tatactatag ctaaacaacc
751 atcgggagga gggtttggag tagaaagata tacacttgaa tacttataca
801 aagaacataa agcaggcaac aatgtatgga caacatcaaa tgttaacctt
851 gatcttgtta gatacacagg atgcagattt atattttgga gacatccaca
901 cattgacttt gtaggagtgt acagcagaaa ctatcctatg caactacaaa
951 aatatacata tccagataca catccacaac aaattatgtt agctaaacat
1001 aaatttttta tacctagttt actaactaaa ccccatggta aaagatatgt
1051 aaaaataaaa attaaacctc caactcaaat gagtaacaaa tggtttttcc
1101 aagaaggctt ttcagataca ggcttagtac aaattcacac tgctgcctgt
1151 gaccttcgat atgcacactt aggctgctgt aacaccaatc aattagcaag
1201 ctttcttaca ctaaacactg acttctacca atatgcagcc tggggaaatc
1251 ctaaaaatcc atatatacct actgaacaag acaaatggta cagaccttat
1301 agaatagttg agccagtaac tgaagtagaa gatgttaaag gcaacaaaaa
1351 gaccataaca acagtgttca ctccatacac agaaacaatt acctataaca
1401 aaggctggtt tcagccagca ttattacaag caaaacaaat aacaaaacct
1451 tcacaagcta atccacctct aaagggagct agatacaatc caacattaga
1501 cactggtgaa aacacagctg tatggctaac aaatgttgtt aaccagtcat
1551 actacccacc aaaaacagac ttagatttat ttgtgcaagg ccttccctta
1601 tggcaactac tactaggatt ccctgactgg gtaaggcaaa aaaaaaaaga
1651 cccaactttt ttacaatcat actacctatg ttttcactgc gatgcaattg
1701 aaccaaagcc aggactacac caagtattta tacctgtaga ctactccttt
1751 gtacaaggaa aaggtcccta tgactcttta ctatctaaat gggacaatga
1801 ccactggtac ccaaccttaa aacaccaatt acaaacaatt aattcagttg
1851 ttgaaactgg accctttgta cctaaattag acacattaaa aaactctaca
1901 tgggaactgt attcaacata cacattttac tttaagtttg gaggtgcatc
1951 attaccagaa gcagaaacta aagaccctgc cacacaagga actcatgagg
2001 tacccgataa gcaatccaaa gcaatacaaa tcattaaccc gaaaaaaaac
2051 actgcagctg cagccttaca ctgctgggac tttagaagag ggcacattac
2101 aagcagagct tttaaaagaa tgtgcgaaaa cgcagaaact gattcagatt
2151 tccaagcaga tgtgtcacca aagaaaacga aaacatcact ccaagagaac
2201 acactcccat gcatcagcaa agaagcagag gaagtccaag actgtctcca
2251 gagtctctac gaagaaaata ccttccaaga aatcccagac cagcaaaaca
2301 tccagcaact cctccaccag cagcagcagc aacagcagca cacaaagctc
2351 cagcttctcc agctcatcaa caacttaaag aagaaacaaa aactaattca
2401 actacaaaca ggaatcctag actaacacca tttaaaccag gttttgaaca
2451 acaaactgaa caagaattag catatgcatt taaaagacct gctagaaaat
2501 ataaagaaga ccctccattt tatccctggt tacccattgc taccccaatt
2551 gtaaattttc atctcaacta caaattctag gccggcaatg ttcacttagt
2601 cactcatgtt taataaagtt taaccccaaa aaaaaaaaaa aaaaaaaaaa
2651 taaaaaattg caaaaattcg gcgctcgcgc gcgctgcgcg cgcgcgagcg
2701 ccttcacgcg ccggcgctcg cgcgccgcgc gtatgtgcta acacaccacg
2751 cacctagatt ggggtgcgcg cgtagcgcgc gcaccccaat gcgccccgcc
2801 ctcgttccga cccgcttgcg cgggtcggac cacttcgggc tcgggggggc
2851 gcgcctgcgg cgcttattta ctaaacagac tccgagtcgc catttgaccc
2901 cccctaagct ccgcccccct catgaatatt cataaaggaa accacaaaat
2951 tagaattgcc aaccacaaac tgccatatgc aaattacttc ccctcttaca
3001 cagtaaaaag gggaagtggg ggggcaaagc ccccccacac cccccgcggg
3051 gggggcaggc ccccccccgc acccccccta cgtcacaaac cacgcccccg
3101 ccgccatctt gggtgcggca gggcgggggc taaaatggcg ggacccaatc
3151 aatttatact ttcactttcc aattaaaaac agccacgtca ctacaaag