Sequence of DPV Torque teno midi virus 12
Torque teno midi virus DNA, complete genome, isolate: MDJN51.
ACC No: AB303562
Dated: 2008-12-16 | Length: 3187 | CRC: -605723260
ID AB303562; SV 1; circular; genomic DNA; STD; VRL; 3187 BP.
XX
AC AB303562;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJN51.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3187
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3187
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJN51"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(219. .568,2130. .2559)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLZ3"
FT /protein_id="BAF76114.1"
FT /translation="MSIFYKPAKYNGHTKQQMWMSVIADFHDPMCNCWHPFGHLLDIIF
FT PEGHKDRDKTIAQIITRDSKCHSGGEDEGASGQTEDLHIKEERDTPADTTGGMAEEETT
FT DALLAAAVENFERCPRISRTHTKKEKESGSTTHTPTRKRSRNTQLSPLALQRRYLPKAT
FT DRRGDQPAHPAAAAAAAPAQKRHPTPHDADKRTTTTTTTTHRHNSLTKFKPGFEQDTEE
FT ELAKIFKRPIRTFKEDPPFYPWLPITPKVSFKLNFKG"
FT CDS join(219. .568,1919. .2351)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VLZ4"
FT /protein_id="BAF76115.1"
FT /translation="MSIFYKPAKYNGHTKQQMWMSVIADFHDPMCNCWHPFGHLLDIIF
FT PEGHKDRDKTIAQIITRDSKCHSGGEDEGASGQTEDLHIKEERDTPADTTGGMAEEETT
FT DALLAAAVENFESGEDHHLMNQTLQTQQTKTNMMFPILCNKQYKLKILKDKTPDLSSTN
FT GITDEALLKKELLRECQLTSQLLQMSQNLQNTHQKRKREWEHNSHSHKKKIKKHSAVSS
FT RSAKKISTKSHRQKRRSTSSSSSSSSSSTSSKETSYTS"
FT CDS 219. .572
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VLZ5"
FT /protein_id="BAF76116.1"
FT /translation="MSIFYKPAKYNGHTKQQMWMSVIADFHDPMCNCWHPFGHLLDIIF
FT PEGHKDRDKTIAQIITRDSKCHSGGEDEGASGQTEDLHIKEERDTPADTTGGMAEEETT
FT DALLAAAVENFER"
FT CDS 413. .2407
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VLZ6"
FT /protein_id="BAF76117.1"
FT /translation="MPFWWRRRRRFWTNRRFTYKRRKRYPRRYNRRYGRRRNYRRPARR
FT RRRKLRKVRRKKKQIAVKQWQPESITKCKILGHSALVVGAEGKQMFCYTTNKNIAVPPK
FT SPYGGGFGVEQYSLNYLYEEYTFHNNYWTKSNILKDLCRFLWLKIIFFRDNKTDFIVSY
FT DRNPPFNLTKFTYPGAHPQQMLLQKHHKLILSQMTKNPNKLTKKFKIKPPRQMISKWFF
FT TKPFAKYPLLSLKASALDLRHSYLGCCNENSQVYFFYLNHGFYKQTNWGQYSTTPYRPS
FT NEINTVYYKDKTGNKKQIGPFNTTATAYDDSVSYTKGYFQPPFLQTQFVCTSSMCDVKA
FT GYLPINVAIYNPMQDSSQGNAIYLVSTLTNTWDQPPKDSSILIQGMPIWLGLFGYLDYV
FT RQVKKDKTWLESHVLVLKSPAIFTFPQPGADAWYCPLSKTFIDGVGPYRTDLTIKQKER
FT WFPQIQHQYEILNSFVEAGPFIPKYTNQSESNWELKFKYIFHFKWGGPSLNEPDITNPA
FT NQDQYDVPDTLQQTIQIENPERQDPRSILHQWDYRRGFIKERALKRMSTYLSTPSDVPE
FT SPEHTPKKKKRVGAQLTLPQEKDQETLSCLLSLCKEDIYQKPQTEEEINQLIQQQQQQQ
FT HQLKRDILHLMMQIREQQQLLQLHTGIIP"
XX
SQ Sequence 3187 BP; 1136 A; 753 C; 576 G; 722 T; 0 other;
ab303562 Length: 3187 16-DEC-2008 Type: N Check: 2234 ..
1 gggtggagac ttctaaacta tataactaac tacagtgacg aatggctgag
51 tttaccccgc tagacggtgc agagaccgga tcgagcgcag cgaggaggtc
101 ttcagctgcc catgggcggg agcccgaggt gagtgaaacc accgaggtct
151 aggggcaact cgggctaggg cagtctagcg gaacgggcaa gaaacttaaa
201 atatattatg ttttacagat gtccatcttc tacaaaccag ctaaatacaa
251 tggacacaca aagcaacaaa tgtggatgtc agtaatagct gactttcatg
301 atcctatgtg taattgttgg cacccttttg ggcacctact agatattata
351 tttcctgaag gtcacaaaga cagagataaa acaatagcac aaataattac
401 tagagattca aaatgccatt ctggtggcga agacgaaggc gcttctggac
451 aaacagaaga tttacatata aaagaagaaa gagatacccc cgcagataca
501 acaggcggta tggcagaaga agaaactaca gacgccctgc tcgccgccgc
551 cgtagaaaac ttcgaaaggt aagaagaaaa aagaagcaaa tagctgtaaa
601 acaatggcaa ccagaaagca taactaaatg taaaatacta ggacattctg
651 ccttagtagt tggagctgaa ggtaaacaaa tgttttgcta tacaactaac
701 aaaaatatag ctgttccacc taaaagcccc tatggaggag gctttggagt
751 tgaacaatac agcttaaact acctatatga agaatatacc ttccacaaca
801 actactggac aaaatcaaat attttaaaag acttgtgtag atttttgtgg
851 cttaaaatta tattttttag agacaacaaa acagacttta tagtttcata
901 tgacagaaat ccaccattta atcttaccaa atttacatat cctggagcac
951 atccacagca aatgctactt caaaaacatc acaaactaat tttatcacaa
1001 atgacaaaaa acccaaacaa actaacaaaa aaatttaaaa ttaaaccacc
1051 tagacaaatg atatccaaat ggttctttac taaacctttt gcaaagtatc
1101 cactactctc acttaaagcc tcagcactag atcttagaca ctcatattta
1151 ggatgctgta atgaaaattc acaagtttat tttttctacc taaaccatgg
1201 cttttataaa caaactaatt ggggtcaata tagcacaaca ccatacagac
1251 catcaaatga gattaatact gtatactata aagataaaac tggcaacaaa
1301 aaacaaatag gtccatttaa tacaacagcc acagcatatg atgactctgt
1351 atcctatact aaaggatact ttcaaccacc atttttacaa acacaatttg
1401 tatgtacatc tagcatgtgt gatgttaaag ctggctattt accaattaat
1451 gtagccatat acaatccaat gcaagacagt agtcaaggca atgcaatata
1501 ccttgtaagc acccttacaa acacatggga tcagcctcca aaagactctt
1551 ctatactaat tcaaggaatg cctatatggc taggtctatt tggctattta
1601 gactatgtaa gacaagtaaa aaaagacaag acatggctag aaagccatgt
1651 tttagtactt aaaagcccag ctatatttac atttccacaa ccaggtgcag
1701 atgcctggta ttgtcccctt tcaaaaacat ttatagatgg tgtaggtccc
1751 tacagaacag atttaacaat taaacaaaaa gaaagatggt ttccacaaat
1801 acaacaccag tatgaaatac taaactcatt tgtggaagca ggacctttta
1851 ttccaaaata cacaaatcaa tcagagagta actgggaact aaaatttaaa
1901 tatattttcc attttaagtg gggaggacca tcacttaatg aaccagacat
1951 tacaaaccca gcaaaccaag accaatatga tgttcccgat actctgcaac
2001 aaacaataca aattgaaaat cctgaaagac aagaccccag atctatcctc
2051 caccaatggg attacagacg aggctttatt aaagaaagag ctcttaagag
2101 aatgtcaact tacctctcaa ctccttcaga tgtcccagaa tctccagaac
2151 acacaccaaa aaagaaaaag agagtgggag cacaactcac actcccacaa
2201 gaaaaagatc aagaaacact cagctgtctc ctctcgctct gcaaagaaga
2251 tatctaccaa aagccacaga cagaagagga gatcaaccag ctcatccagc
2301 agcagcagca gcagcagcac cagctcaaaa gagacatcct acacctcatg
2351 atgcagataa gagaacaaca acaactacta caactacaca caggcataat
2401 tccttaacaa aatttaaacc aggctttgaa caagacacag aagaagaact
2451 agctaaaatc tttaaaagac ccataagaac ttttaaagaa gaccctccat
2501 tttatccctg gttacctata acacccaaag tttcatttaa gcttaatttt
2551 aaaggctagg ccgacactgt tcacttagcg gtgtttgttt aataaagttt
2601 gcaccccaaa aaaattgtaa aataaaaaag aaaaaaaaaa taaaaaattg
2651 caaaaattcg gcgctcgcgc gcgctgcgcg cgcgcgagcg ccgtcacgcg
2701 ccggcgctcg cgcgccgcgc gtatgtgcta acacaccacg cacctagatt
2751 ggggtgcgcg cgtagcgcgc gcaccccaat gcgccccgcc ctcgttccga
2801 cccgcttgcg cgggtcggac cacttcgggc tcgggggggc gcgcctgcgg
2851 cgcttattta ctaaacagac tccaagttgc cattttgccc ccccttagct
2901 ccgccccctc atgaatattc ataaaggaaa ccacaaaatt tgaattgccg
2951 accacaaact gccatatgct aattagttcc ccttttacac agtaaaaagg
3001 ggaagtgggg gggcaaagcc cccccacacc ccccgcgggg ggggcatagc
3051 cccccccgca ccccccctac gtcacaagcc acgcccccgc cgccatcttg
3101 ggtgcggcag ggcgggggct aaaatggcgg gagccaatca ctttatactt
3151 ttaccttcca gttaaaacat gccacgtcac aaacaag