Sequence of DPV Torque teno midi virus 13
Torque teno midi virus DNA, complete genome, isolate: MDJN69.
ACC No: AB303564
Dated: 2008-12-16 | Length: 3230 | CRC: 1875213302
ID AB303564; SV 1; circular; genomic DNA; STD; VRL; 3230 BP.
XX
AC AB303564;
XX
DT 30-AUG-2007 (Rel. 93, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 4)
XX
DE Torque teno midi virus DNA, complete genome, isolate: MDJN69.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3230
RA Okamoto H.;
RT ;
RL Submitted (11-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RX DOI; 10.1007/s00705-007-1046-6.
RX PUBMED; 17712598.
RA Ninomiya M., Takahashi M., Shimosegawa T., Okamoto H.;
RT "Analysis of the entire genomes of fifteen torque teno midi virus variants
RT classifiable into a third group of genus Anellovirus";
RL Arch. Virol. 152(11):1961-1975(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3230
FT /organism="Torque teno midi virus"
FT /host="Homo sapiens"
FT /isolate="MDJN69"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="human serum"
FT /db_xref="taxon:432261"
FT CDS join(219. .598,2184. .2601)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VM01"
FT /protein_id="BAF76122.1"
FT /translation="MSKLCSTDFYKKTPFNPETQTQIWMSQLADGHDNFCHCNSPFAHL
FT LASIFPPGHKDRDLTINQILKRDYIEQCRSTGEEGENSGGEKPDQGGGFKGIEEKQQEE
FT EEEDLPEKELIDMLAAAAEDDTRFRDHSYQKKKDRPGALDTMGRPKRNPNMSPGTLQKK
FT YLPRRNRGRSPQAHTAAAPAAAGAQVEHPQGNIRNKTITKSPKATNRLPKLTPFKPGFE
FT RDTEEEMAKAFFRPARLFKEDPPFYPWLPRPVPLVNFHLNFKF"
FT CDS join(219. .598,1961. .2387)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A7VM02"
FT /protein_id="BAF76123.1"
FT /translation="MSKLCSTDFYKKTPFNPETQTQIWMSQLADGHDNFCHCNSPFAHL
FT LASIFPPGHKDRDLTINQILKRDYIEQCRSTGEEGENSGGEKPDQGGGFKGIEEKQQEE
FT EEEDLPEKELIDMLAAAAEDDTSGGGPEQTDRQSLIQPYKEPMKYPIVSNKQYKLGTQG
FT KLKQLASYTLGTSEKDTLQHQLLKECQTTSQLIQLSNQIQRSFLPKEERQARSSRHHGK
FT TKKKSKHVSRNSSKKVPSKKKQRKISTSSYSSSTSSSRSSSGTSSG"
FT CDS 219. .602
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A7VM03"
FT /protein_id="BAF76124.1"
FT /translation="MSKLCSTDFYKKTPFNPETQTQIWMSQLADGHDNFCHCNSPFAHL
FT LASIFPPGHKDRDLTINQILKRDYIEQCRSTGEEGENSGGEKPDQGGGFKGIEEKQQEE
FT EEEDLPEKELIDMLAAAAEDDTR"
FT CDS 434. .2446
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A7VM04"
FT /protein_id="BAF76125.1"
FT /translation="MPFYWRRRRKFWWGKARPRWRFQRYRRKTTRRRRRRPARKRAHRY
FT AGRRRRRRYKVRRKRQKIPLFQWQPDKIVKCKIKGVTTLVLGAEGKQLVCYTNVKTANT
FT PAKAPGGGGFGCEQFSLDSLYADYKLRKNVWTKSNILLDLCRYLFVKISFYRHPETDFI
FT VTWHRQPPFDISKEIYAACHPQNMLLAKHKMLILSKFTNPKGKLKKTRKVKPPKQMLNK
FT WFFQEHFSHEPLLMIQATAANLNYVNLGCCNTNQMCTFFYINPGFYQIANWGATTTTGY
FT IPYSGYPTATIYTWNYKQWQTGQGGQPFTKPQTYNQSVNYNTGFFSKQMLEAVQLTTDQ
FT TGQRPLGMNPVNICRYNPTLDSGKGNAIWLVSSHANTYREPITDKTLIFEGLPLYMLLY
FT GYLSYVQKVKNVRDFLNNYTLCMRSPALFPYSQPGAETQVIIPVNENFIHGKAAYDETL
FT TESVKGYWTPNVYQQIQTLNTMVESSPYVPKYSQTKNSTWELDMFYTFHFKWGWTRTNR
FT PPITDPALQGTYEVPDSLQQAVQIRDPGKIKATSILHPWDIRKGYFTTPALKRMSDNLS
FT IDTTFQPDSEIIPTKRRKTGPELSTPWEDQKEIQTCLQELFKKSTFQEETEEDLHKLIQ
FT QQHQQQQELKWNILRVISEIKQSQNLLKLQTGFPN"
XX
SQ Sequence 3230 BP; 1136 A; 790 C; 622 G; 682 T; 0 other;
ab303564 Length: 3230 16-DEC-2008 Type: N Check: 7470 ..
1 aggtggagcc tacatatcta tataactaag tagggtggcg aatggctgag
51 tttaccccgc tagacggtgc agggaccgga tcgagcgcag cgaggaggtc
101 cccggctgcc cgtgggcggg agcccgaggt gagtgaaacc accgaggtct
151 aggggcaatt cgggctaggg cagtctagcg gaacgggcaa gaaacttaaa
201 acaatatttg ttttacagat gagcaagctc tgctctacag acttctacaa
251 aaaaactcct tttaatcctg aaactcaaac acaaatatgg atgtcccagc
301 tggctgatgg tcatgacaat ttctgtcact gcaactctcc ttttgctcac
351 ttgcttgcta gtatttttcc tcctggtcat aaagacaggg atctcactat
401 taatcaaata cttaaaagag actacattga acaatgccgt tctactggag
451 aagaaggaga aaattctggt ggggaaaagc cagaccaagg tggaggtttc
501 aaaggtatag aagaaaaaca acaagaagaa gaagaagaag acctgccaga
551 aaaagagctc atagatatgc tggccgccgc cgccgaagac gatacaaggt
601 aagaagaaaa agacaaaaaa ttcctctatt tcaatggcaa ccagataaaa
651 ttgttaaatg taaaattaaa ggagtgacta ccttagtact aggtgcagaa
701 ggaaaacaat tagtatgcta cacaaatgtt aagactgcaa atactcctgc
751 aaaagcccca ggtgggggag gatttggatg tgaacaattc tccttagaca
801 gtttgtatgc agattataag ctaagaaaaa atgtatggac taaaagtaac
851 atactactag acctatgcag atacttattt gtaaaaatat ccttctatag
901 acacccagaa acagacttta ttgtcacctg gcacagacaa ccaccctttg
951 acataagtaa agaaatatat gcagcttgcc acccacaaaa catgttatta
1001 gcaaaacaca aaatgctaat tttaagcaaa ttcacaaacc ctaaaggtaa
1051 attgaaaaaa actagaaaag taaagccacc taaacaaatg ttaaataaat
1101 ggttctttca ggaacacttt tcacatgaac cactactaat gatacaggcc
1151 acagcagcca atttaaacta tgttaaccta ggatgctgta acacaaatca
1201 aatgtgtaca tttttctaca taaacccagg gttttatcaa atagctaact
1251 ggggagcaac cacaacaaca ggctatatac catacagcgg atatcccaca
1301 gcaactatat acacttggaa ctacaaacaa tggcaaacag gacaaggtgg
1351 gcaaccattt acaaagccac aaacttataa tcaatctgtg aactacaaca
1401 caggattttt cagtaaacaa atgctagaag ctgtacaatt aacaacagac
1451 caaacaggcc aaagaccact aggaatgaac cctgtaaaca tatgcagata
1501 taaccctact ttagacagtg gtaaaggaaa tgccatatgg ctagttagct
1551 ctcatgcaaa tacatacaga gaacccataa cagacaaaac acttatattt
1601 gaaggccttc cactatacat gctcttatat ggatacctat cctatgtaca
1651 aaaagttaaa aatgtcaggg actttcttaa caactacaca ctttgcatga
1701 gatcaccagc tctatttcca tactcacaac caggtgcaga aacacaagta
1751 atcatacctg ttaatgaaaa ctttatacat ggcaaagcag catatgatga
1801 gacccttaca gagtcagtga aaggctactg gacaccaaat gtataccaac
1851 aaatacaaac acttaacaca atggtagaaa gtagcccata tgtaccaaaa
1901 tactcacaaa ctaaaaacag cacatgggaa cttgacatgt tttatacctt
1951 tcattttaag tgggggtgga ccagaacaaa cagaccgcca atcactgatc
2001 cagccctaca aggaacctat gaagtacccg atagtctcca acaagcagta
2051 caaattaggg acccagggaa aattaaagca actagcatct tacacccttg
2101 ggacatcaga aaaggatact ttacaacacc agctcttaaa agaatgtcag
2151 acaacctctc aattgataca actttccaac cagattcaga gatcattcct
2201 accaaaagaa gaaagacagg cccggagctc tcgacaccat gggaagacca
2251 aaaagaaatc caaacatgtc tccaggaact cttcaaaaaa agtaccttcc
2301 aagaagaaac agaggaagat ctccacaagc tcatacagca gcagcaccag
2351 cagcagcagg agctcaagtg gaacatcctc agggtaatat cagaaataaa
2401 acaatcacaa aatctcctaa agctacaaac aggcttccca aactaactcc
2451 tttcaaacca ggatttgaaa gagacacaga agaagaaatg gctaaagctt
2501 tttttagacc tgccagactc tttaaagaag accccccttt ctacccatgg
2551 ttacctagac ctgttcccct tgttaacttt cacctaaact ttaaattcta
2601 ggcatgcact gtacacttag cggagtccat ttaataaagt ctgcacccca
2651 ataaaacatg taaaaaacaa aaaaaaaaaa aataaaaaaa tgcaaaaatt
2701 cggcgctcgc gcgcgctgcg cgcgcgcgag cgccgtcacg cgccggcgct
2751 cgcgcgccgc gcgtatgtgc taacacacca cgcacctaaa ttggggtgcg
2801 cgcgtagcgc gcgcacccca atgcgccccg ccctcgttcc gacccgcttg
2851 cgcgggtcgg accacttcgg gctcgggggg gcgcgcctgc ggcgcttatt
2901 tactaaacag actccgagtc gccatttggc cccccctaag ctccgccccc
2951 ctcatgaata ttcataaagg aaaccacaaa attagaattg ccgaccacaa
3001 actgccatat gctaattagt tcccctttta cacagtaaaa tggggaagtg
3051 ggggggcata gcccccccac accccccgcg gggggggcag agcccccccc
3101 gcaccccccc tacgtcacaa accacgcccc cgccgccatc ttgggtgcgg
3151 cagggcgggg actaaaacgg cgggacccaa tcaatttata ctaatacctt
3201 ccaatgaaat actgccacgt cacactaaag