Sequence of DPV Chrysanthemum stem necrosis virus

Chrysanthemum stem necrosis virus gene for nucleocapsid protein, complete cds, isolate: HiCh06A L1.

ACC No: AB438998

Dated: 2009-01-07 | Length: 940 | CRC: 1331962262

                
ID   AB438998; SV 1; linear; genomic RNA; STD; VRL; 940 BP.
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AC   AB438998;
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DT   07-JAN-2009 (Rel. 98, Created)
DT   07-JAN-2009 (Rel. 98, Last updated, Version 1)
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DE   Chrysanthemum stem necrosis virus gene for nucleocapsid protein, complete
DE   cds, isolate: HiCh06A L1.
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KW   .
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OS   Chrysanthemum stem necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-940
RA   Okuda M., Matsuura S., Nagai N., Okuda S., Takeshita M.;
RT   ;
RL   Submitted (27-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Mitsuru Okuda National Agricultural Research Center for Kyushu
RL   Okinawa Region; 2421 Suya, Koshi, Kumamoto 861-1192, Japan
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RN   [2]
RA   Okuda M., Matsuura S., Nagai N., Okuda S., Takeshita M.;
RT   "Symptomatology and transmission of Chrysanthemum stem necrosis virus in
RT   Japan";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .940
FT                   /organism="Chrysanthemum stem necrosis virus"
FT                   /segment="S RNA"
FT                   /isolate="HiCh06A L1"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Hiroshima"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:83871"
FT   CDS             complement(77. .859)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="BAH05023.1"
FT                   /translation="MSKVKLTKENIVALLTQAGEVEFEEEQSQIAFNFQSFCNDNLDQI
FT                   KNMNLISCLTFLKNRQSIMKVVKQSDFTFGKITIKKNSDRIGPNDMTFRRLDSLIRVKL
FT                   IGRTKSDEDLNTIKSKIASHPLVQAYGLSLNDAKSVRLAIMLGGSLPLIASVESFEMIS
FT                   VVLAIYQDSKHKELGIDEKKYDTKEALGKVCTVLKSKGFAIDEQQMEKGKEYANILKAC
FT                   DPRMKGAIALDHYSDSLNKFYEMFGVQKGSKLVPKDLV"
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SQ   Sequence 940 BP; 269 A; 189 C; 148 G; 334 T; 0 other;

ab438998 Length: 940  07-JAN-2009  Type: N  Check: 9358  ..

       1  gacacacttt aaatctttaa cacaccttta acaaacttta gacttatata
      51  tatataagct attttaatag tttgctttaa acaagatctt taggaacaag
     101  tttagatccc ttttgaactc caaacatctc atagaacttg ttgagagaat
     151  cactgtaatg atccaaagca atagctcctt tcattcttgg gtcacaagcc
     201  ttgagaatat ttgcatattc ttttcctttt tccatctgtt gttcgtcaat
     251  agcaaatcct ttgctcttta aaacagtgca aactttccct aaagcttctt
     301  tagtatcata tttcttttca tctattccaa gctctttgtg ctttgaatcc
     351  tggtagatag ctagtacaac gctaatcatc tcgaagctct caactgaagc
     401  aatgagaggg agactacctc caagcattat agccaatcta acagactttg
     451  catcattcaa gctaagcccg taagcctgaa ctagagggtg agaagcaatc
     501  tttgatttga tagtgtttag atcttcatca ctcttagttc ttccaataag
     551  cttgactctt atcaagctat ccaatctcct gaaagtcatg tcatttggtc
     601  caatcctatc agagttcttt ttgatagtga ttttgccaaa agtgaaatca
     651  ctttgtttta caaccttcat tatgctttga cgattcttaa gaaatgtcaa
     701  gcatgatatt aagttcatgt ttttgatctg atccaggtta tcattgcaga
     751  agctttggaa gttgaatgca atttggctct gttcttcctc aaattcaact
     801  tctccagctt gcgtcagcaa agcaacaatg ttttcctttg taagcttaac
     851  tttagacatg atgattaaat agagtttagt ttgctttcaa cgaatttggt
     901  ttagggttta caagtcgtgc agagtattcc gcagtcgctc