Sequence of DPV Torque teno midi virus 15
Torque teno midi virus DNA, complete genome, isolate: Pt-TTMDV210.
ACC No: AB449062
Dated: 2009-01-16 | Length: 3257 | CRC: -955175217
ID AB449062; SV 1; circular; genomic DNA; STD; VRL; 3257 BP.
XX
AC AB449062;
XX
DT 26-NOV-2008 (Rel. 97, Created)
DT 16-JAN-2009 (Rel. 99, Last updated, Version 3)
XX
DE Torque teno midi virus DNA, complete genome, isolate: Pt-TTMDV210.
XX
KW .
XX
OS Torque teno midi virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-3257
RA Okamoto H.;
RT ;
RL Submitted (21-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Okamoto Jichi Medical University School of Medicine,
RL Division of Virology, Department of Infection and Immunity; 3311-1
RL Yakushiji, Shimotsuke-Shi, Tochigi-Ken 329-0498, Japan
XX
RN [2]
RC Publication_Status: Available-Online
RX DOI; 10.1099/vir.0.007385-0.
RX PUBMED; 19141443.
RA Ninomiya M., Takahashi M., Hoshino Y., Ichiyama K., Simmonds P.,
RA Okamoto H.;
RT "Analysis of the entire genomes of torque teno midi virus variants in
RT chimpanzees: infrequent cross-species infection between humans and
RT chimpanzees";
RL J. Gen. Virol. 90(Pt 2):347-358(2009).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3257
FT /organism="Torque teno midi virus"
FT /isolate="Pt-TTMDV210"
FT /mol_type="genomic DNA"
FT /country="Japan"
FT /isolation_source="chimpanzee serum"
FT /collection_date="1992"
FT /note="Chimpanzee 210 (6-year-old male, bred in Japan)"
FT /db_xref="taxon:432261"
FT CDS join(238. .641,2200. .2638)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:B6ZK26"
FT /protein_id="BAG84578.1"
FT /translation="MQHYPPPKLYKIPFLDAWGKQQQWISSVESQHDLWCGCHHWFAHF
FT LDSVVPLDSRNRGKTIQEIIEQSTHQLRALPALPLKPWPGDTTGDEKDPSEDAGKEEPQ
FT NTENQDFTDVMPEDELAEILENAARDENVPGWFRKIRHTPQKKKARRPTVPGRKRQLHY
FT PEPTRDLPSAARNIRRPRAAAPQPQRAATQQKHQPLKITCNVKTKTITNATSHGYDGVS
FT MFHRSPKQPKKFEGWGAIIEKEVAQAFHRPPRTYTQDTPIYPWLPIVPKVSFALRFKN"
FT CDS join(238. .641,2028. .2394)
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:B6ZK27"
FT /protein_id="BAG84579.1"
FT /translation="MQHYPPPKLYKIPFLDAWGKQQQWISSVESQHDLWCGCHHWFAHF
FT LDSVVPLDSRNRGKTIQEIIEQSTHQLRALPALPLKPWPGDTTGDEKDPSEDAGKEEPQ
FT NTENQDFTDVMPEDELAEILENAARDENVPGKHSLYPIQSNKQYKSSIRKSKSQKPYSI
FT AGITAEDLLLKQLLNECTRTSQMQTLLQQMVPKNQTHPAKKESAETHRARKKKTTTLSR
FT TYKRSAKRRKKHQETSSSSSTTSESSNSTKTSAS"
FT CDS 238. .645
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:B6ZK28"
FT /protein_id="BAG84580.1"
FT /translation="MQHYPPPKLYKIPFLDAWGKQQQWISSVESQHDLWCGCHHWFAHF
FT LDSVVPLDSRNRGKTIQEIIEQSTHQLRALPALPLKPWPGDTTGDEKDPSEDAGKEEPQ
FT NTENQDFTDVMPEDELAEILENAARDENVPG"
FT CDS 483. .2459
FT /codon_start=1
FT /transl_table=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:B6ZK29"
FT /protein_id="BAG84581.1"
FT /translation="MAWRYYWRRKRPFRRRWKRRATKYRKPRLYRRYARRRTRRNPRKR
FT RQRRKRPRVRRKRQTLPLKQWQPESIRRCKIIGHTPIILGCSDRQIHSYTYWQDYYIHP
FT RCAAGGGFAVMKWSLAYLYEDFKRRKNIWTKSNCMYDLCRYTGTKLKLYKHETVDFIVS
FT FSRNYPMVVDENTYMHTHPSIMLLKKHRIIIPSKRTNPHGKNYKKITVRPPRQLINKWF
FT FQKNFNDQGLFLLTATAADLMYPHLGPYSKNRLVTITILNTQHFYQQPNWGTATGDYSF
FT GTTNFSTWGGAKTYIDNKLTDYNPSMDMLKQNNKHNASNGIFNKEFPNIQYWKTITNPT
FT HPTPTMQVQYNPARDTGNGNKVYFISTLQTSWAPSTTDKVMTWTGEPLWLQLYGLTDYI
FT LKVKGTSSALQDAICVIESPYIEPQTHNKKFVFVGNPFMNGLTECGNQPPGWLLSKWFL
FT TLEDQMPILNEIIKSGPYVARQDGPRCTWELHCDYRSFFKWGGAQPPLQNICDPHLQET
FT FPVPDTVKQTIQIIDPQKQIPETLFHSWDYRRGLITKTALKRMYKNISDADSSSTDGSE
FT KSDTPRKKRKRGDPPCPEEKDNYIIQNLQEICQAPQETSGDLEQQLHNLREQQLNKNIS
FT LLKLLAMLKQKQLQMQLAMGMME"
XX
SQ Sequence 3257 BP; 1114 A; 822 C; 638 G; 683 T; 0 other;
ab449062 Length: 3257 16-JAN-2009 Type: N Check: 9621 ..
1 aggaggagtt tcactttcta tataactaac agcacttccg aatggctgag
51 tttttcgccg ccagacggtg cggagcacaa cgagcacagc gaggagagac
101 tcagcagcag ctgggcggga gccggaggcg agtgaaacta ccgtagtcta
151 ggggcaattc gggcggctgc agtctggcag aacgggcaag aaacttaaaa
201 ctaccgcgcg ctgtgcgcgc attactttct ttttcagatg caacactatc
251 ctcctcctaa gctatataaa attccttttt tagatgcatg gggcaaacaa
301 cagcagtgga tatcctctgt tgagtcccaa catgatcttt ggtgtggctg
351 tcaccattgg tttgctcatt tcttggattc tgttgtgcct cttgattcgc
401 gaaatcgcgg taaaacaatc caagaaatta tagaacaatc cacacaccaa
451 cttagagctc tgccagctct acccctaaaa ccatggcctg gagatactac
501 tggagacgaa aaagaccctt cagaagacgc tggaaaagaa gagccacaaa
551 ataccgaaaa ccaagacttt acagacgtta tgcccgaaga cgaactcgca
601 gaaatcctag aaaacgccgc cagagacgaa aacgtcccag ggtaaggaga
651 aaaagacaaa ctttaccttt aaaacaatgg cagccagaaa gcattcgccg
701 ctgcaaaatt attggacata caccaataat tttaggctgc tctgacagac
751 aaatacacag ctacacttac tggcaagact actacataca ccctcgatgc
801 gccgctgggg ggggatttgc tgtaatgaag tggtctttag catacttata
851 tgaagacttt aaacgcagaa aaaatatttg gactaaatca aactgtatgt
901 atgacctttg tagatataca ggaacaaaac ttaaactata caaacatgaa
951 acagtagact ttatagtttc tttctccaga aactacccta tggtagtgga
1001 cgagaacacc tacatgcata cacaccctag tattatgctt ttaaaaaaac
1051 acagaataat aataccatct aaaagaacca acccacacgg aaaaaactac
1101 aaaaaaataa ctgttagacc acccagacaa ctcattaaca aatggttttt
1151 tcaaaaaaac tttaatgatc aaggactatt cctcttaact gcaactgctg
1201 cagacttaat gtacccacac cttggaccat atagcaaaaa cagactagta
1251 actataacta tactaaacac acaacacttc tatcagcaac ctaactgggg
1301 aacagcaact ggagattatt cctttggcac aactaacttt agcacatggg
1351 gcggggcaaa aacttacata gacaacaaac tcacagacta taatccaagt
1401 atggacatgc taaaacaaaa caacaaacat aatgcctcaa acggcatttt
1451 taacaaagaa ttccctaaca tacaatactg gaaaacaata acaaacccta
1501 cacacccaac acctacaatg caagtacaat acaaccctgc tagagacaca
1551 ggaaatggca acaaagtata cttcattagc acactgcaaa cttcctgggc
1601 cccatcaacc acagacaaag ttatgacatg gacaggagaa ccgttatggt
1651 tgcaactcta tgggctaaca gactacattt taaaagtcaa aggaactagc
1701 agtgcacttc aagatgctat ttgtgttata gaatccccct atatagaacc
1751 acaaacacat aacaaaaaat ttgtatttgt tggtaatcca tttatgaatg
1801 gattaacaga atgcggaaac caaccaccag gatggttact aagcaaatgg
1851 tttctaacac ttgaagacca aatgcctata ctaaacgaaa ttattaaatc
1901 aggtccgtat gtagcaagac aagacggacc tagatgcaca tgggaactgc
1951 actgtgacta taggagcttt tttaaatggg gaggggcaca acctccatta
2001 caaaatattt gtgaccctca tttacaggaa acattccctg tacccgatac
2051 agtcaaacaa acaatacaaa tcatcgatcc gcaaaagcaa atcccagaaa
2101 ccctattcca tagctgggat taccgcagag gacttattac taaaacagct
2151 cttaaacgaa tgtacaagaa catctcagat gcagactctt cttcaacaga
2201 tggttccgaa aaatcagaca caccccgcaa aaaaagaaag cgcggagacc
2251 caccgtgccc ggaagaaaaa gacaactaca ttatccagaa cctacaagag
2301 atctgccaag cgccgcaaga aacatcagga gacctcgagc agcagctcca
2351 caacctcaga gagcagcaac tcaacaaaaa catcagcctc ttaaaattac
2401 ttgcaatgtt aaaacaaaaa caattacaaa tgcaactagc catgggtatg
2451 atggagtgag tatgttccac aggtctccaa aacaacctaa aaaatttgaa
2501 gggtggggag caataattga aaaagaggta gctcaagcat tccacagacc
2551 accgagaaca tacacccaag acactccaat atacccatgg ttacccattg
2601 tacctaaagt atcatttgca ctaagattta aaaactaggc ctacaatgtt
2651 cacttagtag aggatgttta ataaagttac acccccttaa aaaaccacac
2701 ccctttgtac acgtcatgca tatattaaaa accggaaata aattttttgg
2751 gggcggaggg ttcgcgcgct acgcgcgcga acccatacgc tagggggggc
2801 taccaaaact gcacctagat tgggcagcgc gcgctagcgc gcgctgccaa
2851 atacaccccc cctcgtgctg acgcgcttgc gcgcgtcaga ccacttcggg
2901 ctcggggggt cgcgcctgcg gcgctattta ctaaatagac accgaggggg
2951 gaggcccggt gcccgggccc cccccgtgac gtcacttcct tatacgtcac
3001 ttccgcaagc ccggccccac ccctttaggg gtggggaaag gagggctcgc
3051 cccgagcggt aaccacgcct acttaaaagg gggggcaagc ccccccttaa
3101 accccccgga ggggggcaaa gcccccccct tcccccccta cgtcacagtc
3151 acatgacagc cgccatcttg ggtgcggctg ggcggagctc aaaagcgcgg
3201 gaaccaatca aattaaagta aaactaacca atcaaaatca ctctacacgt
3251 cacaagt