Sequence of DPV Melon yellow spot virus
Melon yellow spot virus RdRp gene for RNA dependent RNA polymerase, complete cds, strain: B07T.
ACC No: AB453906
Dated: 2009-04-16 | Length: 8613 | CRC: -875342762
ID AB453906; SV 1; linear; genomic RNA; STD; VRL; 8613 BP.
XX
AC AB453906;
XX
DT 08-NOV-2008 (Rel. 97, Created)
DT 16-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE Melon yellow spot virus RdRp gene for RNA dependent RNA polymerase,
DE complete cds, strain: B07T.
XX
KW .
XX
OS Melon yellow spot virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-8613
RA Takeuchi S., Shimomoto Y., Ishikawa K.;
RT ;
RL Submitted (15-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Contact:Yoshifumi Shimomoto Kochi Agricultural Research Center; Hataeda
RL 1100, Nankoku, Kochi 783-0023, Japan
XX
RN [2]
RA Takeuchi S., Shimomoto Y., Ishikawa K.;
RT "First report of Melon yellow spot virus infecting balsam pear ( Momordica
RT charantia L.) in Japan";
RL J. Gen. Plant Pathol. 75:154-156(2009).
XX
FH Key Location/Qualifiers
FH
FT source 1. .8613
FT /organism="Melon yellow spot virus"
FT /segment="L"
FT /host="Momordica charantia (balsam pear)"
FT /strain="B07T"
FT /mol_type="genomic RNA"
FT /country="Japan:Kochi"
FT /db_xref="taxon:89471"
FT CDS complement(1. .8613)
FT /codon_start=1
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA dependent RNA polymerase"
FT /db_xref="GOA:B6F1V2"
FT /db_xref="InterPro:IPR015841"
FT /db_xref="UniProtKB/TrEMBL:B6F1V2"
FT /protein_id="BAG82842.1"
FT /translation="MNIQTINSFLDISGEATVYLKNIKDELLRMSNTVQKKFSDGNETI
FT EAGLNSIMSMSHILDKIEEMKSSYHQSTSSIDQKEMGDQISLFLDKYKELELMRHDLFG
FT VLASTRLHFAPKYRHDVYLKECIVDYLEYCHKKTSIRNTITDLDNLLETLVFQHLTPDN
FT YTIYKETNGERACLMIYDWKVSVDTMTESKTSENYYTSVWRTFKDIKIDDEPFLERHPI
FT FITIVILNPTGPMNITVTTCRVVQDFKQSPYKTFPERKKAANLSKLISVNTLRQITGHA
FT SECFNRFYAETQTFKNLLLSRVGDYMNRSNEVFFSHWSHEYKKTNLSNNQMSKDVIDII
FT NSLKNPKICKELIINFIFGNYVLFRNTMSDLHSKDRFEGYKSHCEMFGVVPAGNEEELK
FT DYLEANDDLLSELYDDHLKKIKKDVVSKKEKEVQIESIEDAFNINAEDYAKEYPGCFTN
FT DLQETKTNFSICWSPSTDDLIMDEMNYNNAIIDSFRKSFLEEFRLIFNKPYNGVAADHH
FT FGNSLFDLVKTCLVDLSTDTTGQDKITLEDVVDVKDGSIQVQRPEKSKIWKNVNGVTTR
FT NGNEFSISQSTSNTAKKLFFKGLTLMNIGMGKKKKADCKDELKSKLQQIKLTKEAEGGE
FT YDISKSETILNTSLKAVTHQKKLIRHDNPDVDYYCKSMIESMYVLHGLDSRKKNEGKIS
FT SVYNEYCKNPEEIFTKGNLIETETTISKNIHAVASELSVYSYSEDMMQIAKGLMVADRF
FT MKKTDFKILTCANTSMICLAFKGDGINTGKSGVPYITLHKVEKEIQPYFASLYTKELVV
FT SFLVDGYYVNIMRPQRLNQVRLLSLFKAPSKVPVLFSQYSLLSSEIKSWLNKPSVNIFE
FT CPENKIHNMQKILFSSVIIGTVTKLSRMGIFDFMRYAGFLPLSDYSNIKEYIAEKFDPD
FT ITNVVDCFFVAGIKNLLLKMEEINLSNSIKPLTIDQENDMSGGINDLNITCPITGSTLK
FT TIECLYNNVYLAIYMMPKSLHTHVHNLTTLLSVPAEWEIKFRERMGFKINEEIVPKEDM
FT FNDSGPFSINGVLNIKTLFDYYRKNIDNVASCRSNIEDKEDFLSVPYKIKTLTSSKKCS
FT KSDIIKNSEIATALKDVYGKDPSTIKGNNLYILKGVLKCFSEDRESVQTFLEVENMNVK
FT NYVHFFANILSGDDKVTMKTSSEKFYYKSHPLTVESYMKVRYGHLKTTTVLKSKKVSEE
FT LYDLIKEFNKIMEIDLESLEKLGRGLDGNRTTFMQLLEFIMLKTRANAGNTNFLVSVFE
FT KMQRTKMDREIYLMSMKTKMMLYFIEHTYKHIAQSDPSEAISISGDYKIKNLASLSYDT
FT ITNYNTSLQKNLECKMAFLSADQSKWSASDLTYKYILAVLMNPVLTTGEINLMCECILM
FT YIKLKRVCIPTDIFLNLKRGQKEYGSYGTALSVLTDNLETNTFPVSMNWLQGNLNYLSS
FT VYHSCAMLGYEKAMKRNKDYDFTIRWMVHSDDNATSIVARGDIKSLLQSFKCNSMSELL
FT FRTIQSHFKSYCITLNPKKSYASESEVEFISERIINGAVIPLYCRHLANCSTESSHNSY
FT FDDLMSLSTHVTMLLRKGCPNELISFAYSAIQVQSLSIYSMLPGEVNDINSIIKDIEFP
FT LSKKEIPTCAGGWMHAPVELMSILGPSSNDQLIYYKIILEFFDLKDFSTLKKNIDSLGY
FT VTYRINDLFKRINNNNLTSADRKMICMVNLFKTSLMSEDCDSLSIGMKFQSMITQIIKL
FT PSFVSESSLMKNSSFQDFCKIFPNLRKNSEILDGLNYTTADEMDMDEMSESKFLSSLQL
FT DELSKHMATHPEAYLISPMNDKDYILTNLYAYSSVSKRNQMSNQSTEKLALDRILRSKA
FT KTFLDPDLKEMVTYRENMLLKMKQIVSTEGNDFKIINTISKLMVRDMNFEMIISLMENV
FT VANASIPKANYNFRWFITEKVPSVIEGSPGLIVMSAVYGMDYLVNLGLKKLPLTETSIS
FT ILHDIFGAKKTFDDVKNCLSGGSDEMKTDEFRISSKLKQTVMSINYMIQSQNKLLSINT
FT CFSRKNFPFYSKYNLGKTFITNVLAIWSTIYSRLTNINFYTNLNFVIDRSSRLIVSLQR
FT DMNLEKLIDCCAYVSDRLQSLFPDITVEAIQEILNRLNFNGVDLIRKMKSEINEVKRAI
FT NNIKTSSHVTLSFRPQMIAMSRHAAWLYNFGYINEKEFKFVIDQIRQSEVHYIKTDEQD
FT VRGYYVSGHSYKIGIKTRYNYVQLAMTNQDIQIQLHSPYEYKREEDGKIWEVHVKSIYK
FT LLQKLLSDKQSVLKTFLSIRGDLLPNEFCIHESSNRTLLILMNDTSKPMKIERMKFKGS
FT VNYLYTSDFSWDLMDNQSKYQLRKALTGECYSELYKTIDDSDEFVKVILSNLKQSLECG
FT EEMDSIVEKVLDGIDDEESIDLIKNSVEQIHDVAIRGLTECKTSEEFENYLRDEEFQDL
FT VDFQVSLLQQIIDEKHGIDGRIEKAVQQLTSWTNSLSRFKDICTMLKFSMVNDSKGIRT
FT YKATGSDFNSLSASEIMTSNGYDLFEMLKLIKACEACHSSNSILNLMAFKNIKNKRFIP
FT SHRRFRSHTVHFDFHLILNNEVMSNFYEYKTVSLQDVKISNHVKEVMSNHGFTITGHVM
FT KLDESGLELNPVEIVDDSSTYDKVSKQMRVTKKKSAHLIPANTLLLGELMKFLMLCVNG
FT EEHDIMKLLRSHFEMRPFRENRLLSIQDAIMTCKISGCVQQHFLNDKKEILLLGVADSL
FT ENFINLAIPDHPFLEPFKADLLVRKALNEKDANRKYEILENIRNCMTSDVDFLTEKCLY
FT SNSTNEEINALIFNAVSKIDSEMSSLRPKNRNDKQRLYNLFKEYAEAGSSQS"
XX
SQ Sequence 8613 BP; 2497 A; 1632 C; 1375 G; 3109 T; 0 other;
ab453906 Length: 8613 16-APR-2009 Type: N Check: 7132 ..
1 tcaactttga ctagatcctg cttcagcata ctctttaaat aaattgtaca
51 atctttgttt atcatttctg tttttgggtc gcaaagatga catttctgaa
101 tctatcttgc taacagcatt aaaaatcaat gcattgattt cttcattagt
151 tgagttagaa tataggcatt tctctgttaa gaaatctaca tctgatgtca
201 tgcagtttct gatattttct aagatttcat attttctatt ggcatccttc
251 tcatttagag ccttacgcac taagaggtct gctttaaacg gctccaaaaa
301 ggggtgatct ggaatagcaa gattaatgaa attttcaagg ctgtctgcaa
351 cccctaaaag aagtatctct tttttatcat ttaaaaaatg ctgttggaca
401 caaccactaa tcttgcaagt cattattgca tcttgtatgc ttaataacct
451 attttcccta aaaggcctca tttcaaaatg acttctgagc aatttcataa
501 tatcatgttc ttcaccgttg acacaaagca ttaaaaattt catgagttct
551 cccagaagta aagtgtttgc aggtatcaaa tgagcgcttt ttttctttgt
601 cactctcatc tgtttagaaa ctttatcata tgtggaagaa tcatcaacta
651 tttccactgg gtttaattcc agcccacttt catctaattt cataacatgt
701 cctgtgatag tgaatccatg gttgctcata acttccttga cgtggttgga
751 tatctttaca tcttgtaatg aaacagtttt atattcataa aaattgctca
801 tgacttcgtt attcagtatt aaatggaagt caaaatggac tgtatgagat
851 ctaaacctcc tgtggctggg tatgaacctt ttgtttttga tgtttttaaa
901 tgccattaaa ttcaaaatag aattgctcga atggcaagct tcacatgctt
951 ttatcaactt caacatttca aacagatcat aaccatttga cgtcatgatt
1001 tcactagcag atagagaatt aaaatcggac ccagtagctt tatatgttct
1051 aattccttta gagtcattaa ccatggagaa tttcaacatt gtgcaaatat
1101 ccttgaatct tgacaaactg ttggtccaac ttgtgagttg ctgcactgct
1151 ttctcaattc taccatctat accatgtttt tcatcgatga tttgctggag
1201 gagactgacc tgaaagtcaa caagatcttg gaactcttcg tccctcaaat
1251 agttctcaaa ctcttcagat gttttgcatt cggttaagcc tctgattgct
1301 acatcatgga tttgctcaac agaattcttt atcaaatcaa tgctttcctc
1351 atcatcaatc ccatccaaca ccttttccac tatactatcc atttcttctc
1401 cacactccaa gctttgtttt aaattgctta aaatcacttt cacaaattca
1451 tcactgtcat ctatagtttt ataaagctca ctataacatt ctcctgtcaa
1501 agcttttctc agttggtatt ttgactgatt atccattaaa tcccaagaaa
1551 aatctgatgt gtaaaggtag ttgacactgc ctttgaactt cattctctct
1601 attttcattg gttttgatgt atcattcatt aatattaata gtgtcctgtt
1651 ggagctttcg tggatgcaga actcattggg caatagatcg cctcttatgc
1701 taagaaaggt tttcaaaaca ctttgtttat cagacaaaag tttctgcagc
1751 agcttgtaaa tagacttaac atgaacttcc cagattttcc catcctcttc
1801 tctcttgtac tcataaggtg aatgcaattg aatttgtatg tcttggttgg
1851 tcatggccaa ttgaacataa ttgtatctgg tttttatacc tattttatat
1901 gaatgacctg aaacatagta tccccggaca tcttgctcat cagtcttaat
1951 gtagtgcact tcactttgtc ttatttgatc tatgacaaac ttaaattctt
2001 tttcgttgat gtaaccgaag ttataaagcc atgctgcatg acggctcata
2051 gctatcattt gaggcctaaa agacagtgtg acatggctag atgtttttat
2101 attattaata gctcttttca cctcattgat ttctgatttc attttcctga
2151 ttaggtctac cccattgaag ttcagtctat taagtatctc ttgtatagct
2201 tccactgtaa tatccgggaa taaactctgt agtctgtccg aaacataagc
2251 acaacaatct ataagcttct ccaaattcat gtctctttgc aaggatacaa
2301 tcaacctgga actcctatct ataacaaaat tcaagttagt gtagaaatta
2351 atattggtca acctactgta tatagtactc catatagcca atacattagt
2401 tataaatgtt ttccccaagt tatactttga ataaaacggg aagttcttcc
2451 tagagaagca agtgttgatg gataagagtt tgttctgtga ctggatcatg
2501 tagttgatgc tcattacagt ctgtttcaac ttggatgaga ttctgaactc
2551 atcagttttc atttcatcag accctccact aaggcagttt tttacatcat
2601 caaatgtttt cttagctcca aatatgtcat gtaggattga tatggatgtt
2651 tcagtcagcg gaagcttctt taagcccaga ttgactaaat aatccatccc
2701 gtagactgca gacatgacaa tcagcccagg tgaaccttct ataacactgg
2751 gaactttctc tgttatgaac catctaaagt tatagttagc tttgggtata
2801 gaggcattag ctaccacatt ttccattaaa gaaatgatca tttcaaagtt
2851 catatctctg accattagct tagagatggt gttaattatc ttgaaatcat
2901 taccttctgt gctcacgatt tgcttcattt tcaacaacat gttttctcta
2951 tacgtaacca tctctttcaa atcaggatca aggaaagtct tagctttaga
3001 tcttaagatc ctgtctaaag ctaatttttc cgttgattgg tttgacattt
3051 gattcctttt actaacacta ctgtaagcat ataaatttgt taaaatgtag
3101 tctttatcgt tcatggggga gatcaaatat gcttcagggt gggttgccat
3151 gtgcttactt aactcatcta attgcagaga cgataagaac tttgactcac
3201 tcatctcatc catatccatt tcatcagcag ttgtataatt gagtccatcc
3251 aatatctcag aatttttcct gaggtttggg aaaatcttac aaaaatcttg
3301 gaagctagaa ttcttcatca atgagctttc actcacaaaa cttggcagtt
3351 taattatctg ggtgatcatg gattggaatt tcatccctat gcttaagctg
3401 tcacaatctt cagacatcaa actagtttta aataaattca ccatgcatat
3451 cattttcctg tcagctgagg tcagattatt gttattgatt cttttgaata
3501 aatcatttat tctatatgta acataaccta atgaatcaat gttctttttt
3551 aaggtgctaa agtccttcaa atcaaaaaac tctagaatga ttttgtagta
3601 aattaattga tcatttgatg atggacctag tatggacatc aattcaacag
3651 gtgcatgcat ccatccgcca gcacaagtag gtatttcttt cttacttaaa
3701 ggaaattcta tatctttgat tatagaattt atatcgttta cttctcctgg
3751 caacatagag taaatgctga gtgattgaac ctggattgct gaatatgcaa
3801 atgagatcaa ttcatttgga caaccttttc taagaagcat agttacgtgt
3851 gtggacaacg acattaggtc atcgaaatag ctattatgtg aactttccgt
3901 gctgcagttt gccaaatgac ggcaatacag tgggatgaca gcaccattaa
3951 taattctttc tgagataaac tccacctcag attctgaagc ataactcttt
4001 ttaggattta atgtaataca atagctttta aaatgggact gtattgttct
4051 aaatagtagc tctgacatgc tgttacattt aaaactttgc agtagacttt
4101 ttatatcacc tctagcaaca atcgatgttg cattgtcgtc tgagtgcacc
4151 atccacctaa tagtaaagtc ataatcttta ttcctcttca tggccttctc
4201 ataaccaagc atagcacagg aatggtaaac tgatgacaaa taattcaagt
4251 tcccttgcag ccagttcatg gatactggga atgtgttagt ctccagatta
4301 tctgtcagaa ctgataaggc cgttccatat gacccatact ctttttggcc
4351 acgtttcaga ttcaaaaaga tatctgttgg aatgcacact cgtttgagct
4401 taatgtacat taaaatgcat tcgcacatca aatttatctc tccagttgtc
4451 aatacagggt tcatgagaac agccagtatg tatttatatg ttaaatctga
4501 agcagaccat ttagactgat ctgcagaaag aaatgccatc ttacattcta
4551 aattcttctg gagtgatgtg ttataattgg tgatagtatc atatgataaa
4601 gaggccaaat ttttaatctt gtaatcacct gatattgaga tagcctcaga
4651 tggatcagat tgagctatat gcttgtatgt atgctcaatg aaatatagca
4701 tcattttagt cttcatgctc atcagataaa tctctctgtc catcttcgtt
4751 ctctgcatct tttcaaaaac agaaacaagg aagttagtat ttccagcatt
4801 tgctctagtt ttaagcatta tgaactctaa aagttgcatg aacgttgttc
4851 tatttccatc tagacctctt ccaagctttt ctaaggactc cagatctatc
4901 tccatgattt tgttgaattc tttgataaga tcatataatt cctcgcttac
4951 tttctttgac ttcaagactg tagttgtttt tagatggcca tatctaactt
5001 tcatgtatga ctccacagta agaggatggc tcttataata gaacttctct
5051 gaacttgttt tcatggtgac tttatcatcc ccagatagta tattagcaaa
5101 aaaatgtaca tagtttttga cattcatgtt ttccacttct aagaatgtct
5151 gaacggattc tctatcttca ctgaagcatt ttaaaactcc tttaagaata
5201 tacaaattat tcccttttat tgtgcttggg tctttgccgt agacatcttt
5251 caaagctgtt gctatctcag agttttttat aatgtctgat ttagagcatt
5301 tcttggacga tgttagggtt tttatcttat atggaacaga caagaaatct
5351 tctttgtctt cgatgtttga ccggcaacta gcaacattgt ctatattctt
5401 tctgtagtag tcaaaaagtg ttttaatgtt taaaacacca tttatagaga
5451 atggaccaga atcattgaac atgtcttctt taggtacaat ctcttcattt
5501 atcttgaatc ccattctttc tctgaacttt atttcccact ctgcaggcac
5551 actcaacaac gttgttaaat tgtggacatg agtgtgcaaa gatttaggca
5601 tcatgtagat tgccaagtat acattgttgt aaaggcactc tattgtcttg
5651 agggtagagc ctgttatagg gcaagttata ttcaagtcat ttatacctcc
5701 tgacatgtca ttttcttgat ctatagtcaa cggtttgatg ctgttactca
5751 aatttatttc ctccatcttt agaaggaggt tttttattcc tgcaacaaaa
5801 aagcaatcaa caacatttgt tatgtcaggg tcaaattttt ctgctatgta
5851 ttcttttatg tttgagtagt cagataaagg gagaaaccca gcatacctca
5901 tgaaatcaaa gatacccata cgactcaatt ttgtgactgt acctatgatc
5951 acagaagaaa ataaaatttt ctgcatatta tgaatcttgt tttctgggca
6001 ttcaaatata tttacagatg gcttattcag ccatgattta atttcactgc
6051 ttaaaagaga gtactgagaa aatagaacag ggactttgct tggtgctttg
6101 aagaggctca acagcctgac ttggtttagt ctctgaggtc tcattatatt
6151 tacgtaatat ccatcaacta agaaagaaac caccagttct ttagtgtaca
6201 atgatgcaaa atatggctga atctcttttt ccaccttgtg cagtgttata
6251 taagggactc ctgacttccc tgtatttatc ccatcaccct taaatgctaa
6301 acagatcatg cttgtgttag cacaagtgag tattttgaaa tctgtcttct
6351 tcataaacct atcagcaacc atgaggcctt tagcaatctg catcatgtct
6401 tcactgtaag aataaactga taattctgat gcaacggcat gaatattttt
6451 agatatagtt gtttctgtct cgatgagatt ccctttagta aaaatctcct
6501 ctggattctt acagtattca ttgtagacag agctaatttt cccttcattc
6551 tttttcctac tgtctaaacc gtgaagcaca tacatggatt ctatcatgga
6601 tttgcaataa taatcaacgt ctggattatc atgtctgatt aacttttttt
6651 ggtgtgtaac agctttcaag ctggtattga gtattgtttc acttttagag
6701 atgtcatatt cccctccttc agcctcttta gtgagcttaa tctgttgcaa
6751 cttgctcttt aattcatctt tgcaatcagc tttctttttc tttcccatgc
6801 caatattcat tagagtcagt cccttaaaga ataatttctt tgctgtgtta
6851 gacgttgact gagagattga aaactcattc ccattccttg tagttacacc
6901 atttacattc ttccaaatct tagatttttc tggtctttgg acctgtatgc
6951 ttccatcctt tacatcaacc acatcctcta atgtgatctt gtcctgaccc
7001 gtggtatctg tgctcaagtc aactaaacat gttttgacca aatcaaagag
7051 agagtttcca aaatgatgat ccgcagctac accattataa ggcttgttga
7101 atatcagacg gaactcttct aaaaaagact ttctgaagga gtcaatgatg
7151 gcattgttgt agttcatttc atccattatt agatcatctg tcgatggtga
7201 ccagcaaatg gaaaaatttg tttttgtctc ttgaagatca tttgtaaaac
7251 acccaggata ttcttttgca taatcttcag catttatgtt aaaagcatct
7301 tcaatgcttt ctatttgcac ttctttttct tttttagata ccacgtcttt
7351 ctttatcttc ttcaagtggt catcataaag ctcagatagc aagtcatcat
7401 tggcttctag ataatctttc aattcttctt catttcccgc aggaaccact
7451 ccaaacattt cacaatggct tttatatcct tcaaatctat cttttgaatg
7501 gagatcactc attgtatttc taaataaaac ataattgccg aaaataaagt
7551 tgataatcaa ttctttacag attttcggat tttttaatga atttataata
7601 tctatcacat cttttgacat ttgattgttt gataaattgg ttttcttgta
7651 ctcatgagac cagtggctga aaaagacttc attagatcga ttcatatagt
7701 cacctactct ggacagcaat aaattcttga aagtttgagt ttctgcataa
7751 aatcgattga agcactctga agcatggcct gttatttgcc ttaatgtgtt
7801 aactgaaata agtttagaca aatttgcagc ttttttcctt tcagggaatg
7851 tcttgtatgg tgactgcttg aaatcctgaa ccactctaca agtggttaca
7901 gtgatgttca tgggaccagt tgggtttaat ataactattg tgataaaaat
7951 tggatgcctt tccaaaaacg gttcgtcatc tattttgatg tctttaaatg
8001 ttctccaaac acttgtgtaa taattttctg atgtctttga ttctgtcatt
8051 gtatctacag acactttcca atcataaatc atcaagcagg ctctttcacc
8101 attagtctcc ttatatattg tataattgtc tggagtcaga tgttggaaaa
8151 ccaaagtttc caaaaggttg tcaagatctg ttatggtatt tcttatagat
8201 gtctttttat ggcagtattc tagataatct acaatgcact ctttaaggta
8251 aacatcatgt ctatacttag gggcaaaatg aagcctggta cttgccagaa
8301 ctccaaaaag gtcatggcgc atgagctcta attctttata tttatccaga
8351 aacagagata tttgatcacc catttctttt tgatcgatcg aagatgtgct
8401 ctggtgatat gaagatttca tttcttctat cttatccaag atatggctca
8451 ttgacattat tgaatttaat cctgcttcta tggtctcatt accatcagag
8501 aatttctttt gtacagtgtt tgacattcgc agaagttcat ctttaatatt
8551 ctttaaatag acagtagctt ctcctgaaat atctaggaaa ctgtttatcg
8601 tttgaatgtt cat