Sequence of DPV Potato virus Y

Potato virus Y gene for polyprotein (P1 and HC-Pro region), partial cds, isolate: SYR-II-Bu5.

ACC No: AB461477

Dated: 2010-01-18 | Length: 1068 | CRC: -1917238972

                
ID   AB461477; SV 1; linear; genomic RNA; STD; VRL; 1068 BP.
XX
AC   AB461477;
XX
DT   09-NOV-2009 (Rel. 102, Created)
DT   18-JAN-2010 (Rel. 103, Last updated, Version 2)
XX
DE   Potato virus Y gene for polyprotein (P1 and HC-Pro region), partial cds,
DE   isolate: SYR-II-Bu5.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1068
RA   Chikh Ali M., Maoka T., Natsuaki K.T.;
RT   ;
RL   Submitted (23-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Mohamad Chikh Ali Laboratory of Plant Pathology, Faculty of
RL   Agriculture, Utsunomiya University, International Agricultural Development;
RL   Mine-machi 350, Utsunomiya 321-8505, Japan
XX
RN   [2]
RA   Chikh Ali M., Maoka T., Natsuaki T., Natsuaki K.T.;
RT   "PVYNTN-NW, a novel recombinant strain of Potato virus Y predominating in
RT   potato fields in Syria";
RL   Plant Pathol. 59:31-41(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1068
FT                   /organism="Potato virus Y"
FT                   /lab_host="Nicotiana tabacum cv. Samsun"
FT                   /isolate="SYR-II-Bu5"
FT                   /mol_type="genomic RNA"
FT                   /country="Syria:Aleppo"
FT                   /collected_by="Dunia Wafai Baaj"
FT                   /collection_date="2004"
FT                   /identified_by="Mohamad Chikh Ali"
FT                   /db_xref="taxon:12216"
FT   5'UTR           <1. .166
FT   CDS             167. .>1068
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /protein_id="BAI48922.1"
FT                   /translation="MATYMSTICFGSFECKLPYSPASCGHIVKEREVLASVDPFADLET
FT                   QLSARLLKQEYATVRVLKNGTLTYRYKTDAQITRIQKKLERKDREEYHFQMAAPSIVSK
FT                   ITIAGGEPPSKLESQVRRGVIHTTPRMRTAKTYHTPKLTEGQINHLIKQVKQIMSTKGG
FT                   SVQLISKKSTHVHYKEVLGSHRAVVCTAHMRGLRKRVDFRCDKWTVVRLQHLARTDKWN
FT                   NQVRATDLRKGDSGVILSNTNLKGHFGRSSEGIFIVRGSHEGKIYDARSKVTQGVMDSM
FT                   VQFSSAESFWKGLDGNWAQ"
FT   mat_peptide     167. .991
FT                   /gene="P1"
FT                   /product="P1 protein"
FT   mat_peptide     992. .>1068
FT                   /gene="HC-Pro"
FT                   /product="helper component protein"
XX
SQ   Sequence 1068 BP; 339 A; 227 C; 239 G; 263 T; 0 other;

ab461477 Length: 1068  18-JAN-2010  Type: N  Check: 858  ..

       1  caacataaga aaaacaacgc aaaaacactc ataaacgctt attctcactc
      51  aagcaacttg ctaagtttca gtttaaatca tttccttgca attctcttaa
     101  acgatattgg aaaccatttc aactcaacaa gtaatttcat cacttccaac
     151  caattttaga tcctcaatgg caacttacat gtcaacaatc tgtttcggtt
     201  cgtttgaatg caagctacca tactcacccg cctcttgcgg gcatattgtg
     251  aaggaacgag aagtgctggc ttccgttgat cctttcgcag atctggaaac
     301  acaacttagt gcacgattgc tcaagcaaga atatgctact gttcgtgtgc
     351  tcaagaacgg tactcttacg taccgataca agactgatgc ccagataacg
     401  cgcatccaga agaaactgga aaggaaggat agggaagaat atcacttcca
     451  gatggcagct cctagtattg tgtcaaagat cactattgct ggtggagagc
     501  caccttcaaa acttgaatca caagtgcgga ggggtgtcat ccacacaact
     551  ccaaggatgc gcacagcaaa aacatatcac acgccaaagt tgacagaggg
     601  acaaataaac caccttatca agcaggtgaa gcaaattatg tcaaccaaag
     651  gagggtctgt tcaactgatt agcaagaaaa gtacccatgt tcactataaa
     701  gaagttttgg gatcacatcg cgcagttgtt tgcactgcac atatgagagg
     751  tttacgaaag agagtggact ttcggtgtga taaatggacc gttgtgcgtc
     801  tacagcatct cgccaggacg gacaagtgga ataaccaagt tcgtgctact
     851  gatctacgca agggcgatag tggagttata ttgagtaata ctaatctcaa
     901  aggacacttt gggagaagct cggagggcat attcatagtg cgtgggtcgc
     951  acgaaggaaa aatctatgat gcacgttcca aggttactca aggggttatg
    1001  gattcaatgg ttcagttctc aagcgctgaa agcttttgga agggattgga
    1051  cggcaattgg gcacaaat