Sequence of DPV Satsuma dwarf virus
Citrus mosaic sadwavirus genomic RNA, segment RNA 2, complete sequence.
ACC No: AB465581
Dated: 2009-04-14 | Length: 5266 | CRC: -425213913
ID AB465581; SV 1; linear; genomic RNA; STD; VRL; 5266 BP.
XX
AC AB465581;
XX
DT 14-APR-2009 (Rel. 100, Created)
DT 14-APR-2009 (Rel. 100, Last updated, Version 1)
XX
DE Citrus mosaic sadwavirus genomic RNA, segment RNA 2, complete sequence.
XX
KW .
XX
OS Citrus mosaic sadwavirus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Sadwavirus.
XX
RN [1]
RP 1-5266
RA Iwanami T.;
RT ;
RL Submitted (13-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL Contact:Toru Iwanami National Institute of Fruit Tree Science, Citrus
RL Greening Research Program; Fujimoto 2-1, Tsukuba, Ibaraki 305-8605, Japan
XX
RN [2]
RA Iwanami T.;
RT "Properties and control of Satsuma Dwarf Virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5266
FT /organism="Citrus mosaic sadwavirus"
FT /segment="RNA 2"
FT /isolate="Ci-968"
FT /mol_type="genomic RNA"
FT /country="Japan:Wakayama"
FT /db_xref="taxon:57325"
FT CDS 330. .5054
FT /codon_start=1
FT /transl_table=1
FT /product="polyprotein"
FT /note="This polyprotein contains movement protein and coat
FT proteins."
FT /protein_id="BAH56589.1"
FT /translation="MEIYGFSPLSFQDTESWKNSAFAACRGCKTYPIEEVGADGLVTVR
FT EVPVGLVLKGVMAQYRSLMWTQFVADAATITHDRKSFDFWLYCRRAEVADLRAFEARKK
FT KRAAKAAALSAEGIIDRSYKGRTYKVSVRGLSWKSVRAAQKAARRAAKNFGFSISENPF
FT SHLPSEGSMCAAGEIPASVPSVVLPQIDWAARKAASKKVSSEDTMDAPFLGLLPESPRL
FT RNEGLLSSLRAKVATLVASRDRQVPVSKRVVKTQKQNSRSEFCFEEARTTKCVINGKIG
FT VPNNPIIQRLLPFHKIQRKRIVAKFKPQTMCSSRHNYDMAHQNDECRWFIYPTTIKIEL
FT KDAYRTANNLGIISDDASALERVRAFSSHHLDLEREVLALERECHPAPRKTIIARVLAF
FT FMEEYALAYDEAKERLRLQREDKRREHLAFLRHLKRQAFDQLTAERAEYIREISEAREV
FT ALALQRKIEEGPPPQLMYIPEWHVVQKAKESIDLDDTLVYEGQRIALRQCYDNRLMHMQ
FT SDPDSKKSRKFIAACGRHFERIFGYAVHKGTRTETMTQVAESPPPVMISPLGRTVGGNP
FT PTETPGTSAVRAAMQRAVERNRPGPGESSAMPAREPLLSHRGQYYARSLSDRYNNIFSR
FT NNAYNLMRETDVPIMEFTFGQQQDIAIPLSSRFGNHPSLHIGELEIAVQSAVLSGVDTA
FT MAIMVSDASHDRLEEGFLSLTILRLGAGWMRHTIPIGITVFPTVPLVDRFLRLSVLTGG
FT SPMADGRQVARLHYGLLGQAYTGAGEQRLTQYATRRINVRQTHVTQFLEGNHIHIARSV
FT DRQQPLPHMILEYRPLSGSTRYVARPGGYQAVEGGRQSVDITQNFIAMPTHLTRSATLR
FT DTDVSGPVNPNTGRVSERQIDDNSEIPVADEEPIGGRRLPRGSAFQRGFTEFSERNENK
FT IEHLFVPSMHGLSLKEDIHLFTKNLEIPSTADFCKELVRYKVMAEAVNYRSASYYSRLL
FT SGVAILRPHFKFTCRLVTPILESIPLLIVWDDLSELTSKVARLSAAFEIIDSDHTRAAV
FT YEVRPSGPTDLLTPSKANYGMGGDLVIFSGGYGSSSLSSPLRLKIEASLLKDSQLGSGE
FT VGVPQGPSSMLSFHYLNEVDLGDVNLYTFLGSCKYDSKSVVNSRKYISICPAAGLVHNK
FT GKAAYLGLTASLFSMYNFWKGSYILKVDVLSKGSCAGAISIYVPPPGTSADHYSQSQLD
FT TLPRYELPWRGSGSARFEVENFSWIGWHLTKPQRFVTNEDWFSLNAGVVVVLNQPPTTR
FT TGGSSDIRVIFRIVKFKNLTLKERSTTCDIFAGIKDASYTSPLLDVLDNTISAPASVAS
FT EPDVGLDASSSVQTNDMLPRSFGAYYAYLLGGAVPGKRWHSYVLPITMGHHRSEIGTTK
FT TGYLNEELDDAVRYKVFVAQSIAYFMRRGAFYAADLLFTLVIDGDFTSERAFAQLGLIQ
FT TPLMEYYEGYSTDRTLSSEGGCSNQLGVGKSYXQLLVPRRNYRARSVTTYTSVLFFETI
FT GSLSIRFTVSDKIKGVHLFVEAVGPIDIDGYGRGLNVGFTDESFVLMPSLRTAA"
XX
SQ Sequence 5266 BP; 1328 A; 1179 C; 1244 G; 1514 T; 1 other;
ab465581 Length: 5266 14-APR-2009 Type: N Check: 7471 ..
1 gattgttaaa gcgaactgga agccccagac aaaatttaat ctttttaact
51 tgcaaactct ctctctctct ctgcatctta aaatctttct tatgtctact
101 tcttctgttc actttatgat gtgtaggata gcgcctacac cacgaaacta
151 gggatagcgc cctagcctcg atactaagga tagcgcctta gttttccttt
201 ttctgtactt aatttcgatt tcgtactctt gtgacttcgg tcatttcttg
251 tttattttaa attttaaaaa ccaaaaagat tttcctattt ctttaatttc
301 ttttttgctt taaatttaaa ttttacttca tggagatcta cggattctcc
351 cccctctcct tccaggacac cgagtcctgg aagaattctg ctttcgcagc
401 ctgccgaggc tgcaagacct accccattga ggaggtaggt gctgacgggc
451 tggtaacagt ccgggaggtc ccggtgggcc tcgtgctgaa gggcgtaatg
501 gcccaatatc ggtccctcat gtggacccaa ttcgtggcgg atgccgccac
551 cattactcat gaccggaagt cttttgactt ctggttatat tgccgccgcg
601 ctgaggtggc cgatcttagg gccttcgagg cccgtaagaa gaagcgcgcc
651 gctaaggccg ccgccctcag tgctgagggc attattgatc gctcctataa
701 ggggcgaact tacaaggtct ctgtcagagg cctttcgtgg aaatctgtgc
751 gggctgcaca gaaggctgcc aggagagcag ccaaaaattt tgggttctct
801 atctcggaga atcccttttc acatctccca tctgaaggga gtatgtgtgc
851 tgcaggtgaa attcctgctt ccgttccatc tgtggtttta ccacagattg
901 attgggctgc ccgcaaggcg gcctccaaga aggtgtcgtc tgaggacacc
951 atggatgcgc cctttcttgg gttgctcccg gagtctcccc gcctccgtaa
1001 tgaggggttg ctctcttcat tgagggctaa ggtcgccact cttgtggcga
1051 gcagggaccg tcaagtccct gtctcaaaaa gggtcgtcaa gacccaaaag
1101 cagaactcac gcagtgagtt ttgctttgag gaggcgcgca ctaccaagtg
1151 cgttattaac ggcaaaatag gtgttccgaa caaccctatt attcaacgcc
1201 ttctcccctt ccacaaaatc caaaggaagc ggatagtggc taaatttaag
1251 ccacaaacta tgtgctcctc aaggcacaat tatgacatgg ctcatcaaaa
1301 cgatgaatgt aggtggttca tctatccaac cactatcaaa attgagctta
1351 aagatgccta ccgaactgca aataatttag gcatcatatc agatgacgct
1401 tccgcgctcg agcgtgtacg ggccttttcc tctcaccatc tagacttaga
1451 gagggaagtg cttgcactcg aacgagagtg ccatccggcc ccaaggaaga
1501 ctattattgc cagagtgctt gccttcttta tggaggaata cgcgctggct
1551 tatgatgagg ccaaggaacg ccttaggttg caacgtgaag ataaacgtag
1601 ggagcatctt gcctttctac gtcatttgaa gcgccaagcg ttcgatcaat
1651 taactgccga acgagccgaa tacataaggg aaatttctga agctcgtgag
1701 gtagctttgg ctctccagcg gaaaattgag gagggcccgc caccgcaatt
1751 aatgtatatc cctgagtggc atgtcgttca aaaggccaag gagagtattg
1801 atctagatga tacactggtc tatgaaggac agcgcatagc tttgcgccag
1851 tgctacgaca ataggctaat gcatatgcaa agcgatcccg attctaagaa
1901 atcgcgtaaa ttcatagcgg cttgtggtag gcattttgag cgaattttcg
1951 gatatgctgt gcacaaaggc acaagaaccg aaacgatgac tcaggttgct
2001 gagtctcctc caccagtgat gatttcaccc ttggggcgaa cggttggagg
2051 aaatccacct acggaaacac caggaacttc tgctgttaga gcagctatgc
2101 aacgagcagt tgagcgcaat agacctggcc ccggcgaatc ttctgcaatg
2151 ccagctaggg aacctctgct ctcacataga gggcagtatt atgctcgttc
2201 tctctcagat agatataaca atatcttctc tcgcaataac gcttataatc
2251 tcatgcggga gactgacgtg cccatcatgg aattcacatt cgggcaacag
2301 caagatattg ccatccctct atcttcaaga tttggaaacc acccatccct
2351 ccatattggt gaattagaaa tagccgttca atcggcagtc ttatctggag
2401 tggatactgc aatggctatt atggtctctg atgcttcaca tgatagactc
2451 gaggagggtt tcttgagtct aactattttg agactgggtg ccgggtggat
2501 gcgccatact ataccgattg gcatcaccgt cttcccaacg gttcctctgg
2551 tcgatcgttt cttgagacta tcggttttaa ccgggggatc ccctatggca
2601 gatgggaggc aagtggctag gctccattat ggattgcttg gtcaagcata
2651 tacgggcgca ggcgagcaaa gattaactca atatgctact cgaagaatta
2701 acgtgcgtca aacgcatgtt actcaatttc tcgagggcaa tcatattcat
2751 attgctcgct ctgtggatag gcagcagccg ttaccccata tgattttgga
2801 gtatcggcct ctatctggga gtaccagata tgtggcacga cctggtggtt
2851 atcaagccgt agaaggtggt aggcagagtg tagatataac tcagaatttt
2901 atagcgatgc ctacacatct cacaagaagt gccacactcc gggatactga
2951 cgtgtcgggg cccgtaaatc caaacactgg gcgggtatct gaaagacaaa
3001 ttgatgataa tagcgagatc cctgttgctg atgaagaacc aattggtggt
3051 agacgccttc ccaggggctc tgccttccag agaggattta cagaattttc
3101 tgaaaggaat gagaataaga tagaacatct tttcgttcct tctatgcatg
3151 gtctctcact caaggaagat atccacttgt ttactaaaaa ccttgagata
3201 ccttctaccg ccgatttctg caaagagttg gttaggtata aggttatggc
3251 agaggccgtg aattatagga gtgccagcta ctactcgcgc ctattgtctg
3301 gggtagcaat tttgcgaccc catttcaaat ttacctgtag gctagtaact
3351 ccaattctgg aatccatacc tctacttata gtttgggatg atctttcaga
3401 gttaacatct aaagttgccc gactatctgc agcctttgaa atcattgatt
3451 cagatcacac tcgagctgct gtttatgagg ttcgtccatc gggaccaact
3501 gacctgttga ccccttcaaa agccaattac ggtatggggg gcgatcttgt
3551 tatcttttct ggtggttatg gttcttcttc tctatcttcg cctttaagac
3601 ttaaaatcga agcgagtctt ttaaaagatt cgcagttggg ttcaggtgag
3651 gttggagtgc ctcaaggtcc gtcatctatg ttatcatttc attatcttaa
3701 tgaggtggac cttggggatg taaatttgta tactttccta ggtagttgta
3751 aatacgattc taaatcagtt gtaaatagta ggaaatatat ttctatttgt
3801 ccggcagctg gtcttgtaca taataaagga aaagctgctt atttaggatt
3851 aacggcttct cttttttcca tgtataattt ttggaaggga agttatattt
3901 taaaggtgga cgttctttcc aaggggagtt gtgctggagc tattagcata
3951 tatgtgcccc caccaggcac aagcgctgat cactactctc aatcacaatt
4001 agataccctc ccacgttatg aattgccatg gaggggatcg ggatctgcca
4051 ggttcgaggt tgaaaatttt tcctggattg gttggcactt aaccaaaccc
4101 cagcgttttg tgaccaatga agattggttt tcgttgaatg ctggggtggt
4151 tgtggtgcta aaccagccac caacaacaag aactggtgga tcaagtgata
4201 taagagtgat atttcgtatt gttaaattta agaatctcac tcttaaggaa
4251 cgatccacaa cctgcgatat atttgcaggt ataaaagatg cgtcgtacac
4301 ttcaccgctt ttagatgtgc ttgataatac tatatcggca ccagcttcag
4351 tcgcatctga accagatgtt gggttggacg ctagctctag tgttcaaacc
4401 aatgatatgc tcccacgatc gtttggcgca tactatgcct atttattggg
4451 tggagcagta cctgggaaaa ggtggcactc gtatgtgctg cccataacaa
4501 tgggacacca cagaagtgaa atcggcacta caaagactgg gtatctaaat
4551 gaagaacttg acgatgcagt caggtataag gtattcgttg cgcaatccat
4601 tgcatatttt atgcgcaggg gggcctttta tgccgccgac ctccttttca
4651 ctctagtaat tgatggagat ttcacttccg aacgtgcttt cgctcagctt
4701 ggattgatcc aaactccctt gatggagtac tatgagggat attctaccga
4751 taggactctt tcgtccgaag ggggatgttc caaccaacta ggcgtgggca
4801 aatcatatat ncaattactt gtcccgagga gaaactatag ggctagatct
4851 gttacaacgt atacttctgt tctattcttt gaaacgattg gttccctttc
4901 gatacgattt actgtaagtg ataaaatcaa aggggttcac ctatttgttg
4951 aagcagtagg ccctattgat attgatgggt atgggagagg acttaatgtt
5001 ggatttaccg atgaatcctt cgttttaatg ccctcactcc gtacagccgc
5051 ttaagagtgg cattaggtga tgcccaccgg accttaacgt gggtttacat
5101 gtaaatacta gtgtgtattt cctgtttgtt tgttttgttt gttttcttaa
5151 aataaactgg atttcaaaaa gggtttctca aactcttccc tttccgatcc
5201 aggagtttcg cgtgtttttc ttgatttctg tcgcgtgcgg ttacgaccag
5251 tgaaagtctg gtggcc