Sequence of DPV Satsuma dwarf virus
Citrus mosaic sadwavirus strain ND-1 genomic RNA, segment RNA 2, complete sequence.
ACC No: AB465582
Dated: 2009-04-14 | Length: 5344 | CRC: -1238520103
ID AB465582; SV 1; linear; genomic RNA; STD; VRL; 5344 BP.
XX
AC AB465582;
XX
DT 14-APR-2009 (Rel. 100, Created)
DT 14-APR-2009 (Rel. 100, Last updated, Version 1)
XX
DE Citrus mosaic sadwavirus strain ND-1 genomic RNA, segment RNA 2, complete
DE sequence.
XX
KW .
XX
OS Citrus mosaic sadwavirus strain ND-1
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Sadwavirus.
XX
RN [1]
RP 1-5344
RA Iwanami T.;
RT ;
RL Submitted (13-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL Contact:Toru Iwanami National Institute of Fruit Tree Science, Citrus
RL Greening Research Program; Fujimoto 2-1, Tsukuba, Ibaraki 305-8605, Japan
XX
RN [2]
RA Iwanami T.;
RT "Properties and control of Satsuma Dwarf Virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5344
FT /organism="Citrus mosaic sadwavirus strain ND-1"
FT /segment="RNA 2"
FT /isolate="ND-1"
FT /mol_type="genomic RNA"
FT /country="Japan:Yamaguchi"
FT /note="synonym: Natsudaidai dwarf virus"
FT /db_xref="taxon:104661"
FT CDS 332. .5047
FT /codon_start=1
FT /transl_table=1
FT /product="polyprotein"
FT /note="This polyprotein contains movement protein and coat
FT proteins."
FT /protein_id="BAH56590.1"
FT /translation="MEIYGFSPLSFQDTESWKNSAFAACRGRKTSLIEEVCADGSTVTR
FT EVPVGLILKGVMAQYRSLLWTQFVADSATTTKDRESFDFWLFCRRAEAAQERAYLARKS
FT KRAAKAAALDAEGIIDRSYKGRTYKVSTRGLTWKSVRAAQKAARKAAKYFGFSVSENPF
FT SCLPSEGRSVAAGETPASLSVVLPQIDWAARKAASRKVPTVGTEDAPFLGLLPESPRLR
FT DEGLLSLLRAKIATLVASRDRQVPVPRRVVKTQKKNSQCEFFTEEVRTTKCVINGKMGI
FT PRNPIIQRLLPTRLIQRKRVVAKFEPQIVSSSRHKFDMSHIYDERRWVIYPSIIKIELK
FT DAYQTAQNLGILSDSASALERVRALSSHHLDLEREVRALEQEHYPAPRKTVAARIFSFF
FT MEEYALAHEEAKERIRRQKEDKRREHLSFLRHLRRQAFELLAAERAAYLKKISEAREIA
FT IALKERAEKGPPPQLLYIPEWHVVQHAKAHMEGTSYDRTLREHMCHRYDQKLAAFQNGS
FT LSESSKFAAACGAHFERIFGYAVHRSARTETVTQVAESSPPPVITAPVGRMVGGNPPTE
FT TPGTAAVRAAMQRAVERNRPGPRESSAMPAREPLLSHRGQYYARSLSDRYNNIFSRNNA
FT YNLMRETDVPIMEFTFGQQQDIAIPLSSRFGNHPSLHIGELEIAVQSAVLSGVDTAMAI
FT MVSDASHDRLEEGFLSLTILRLGAGWMRHTIPIGITVFPTDPLVDRLLRLSVLTGGSPM
FT ADGRQVARLHYGLLGQAYTGAGEQRLTQYATRRINVRQTHVTQFLEGNHIHIARSEDRQ
FT QPLPHMNLEYRPLSGSTRYVARPGGYQAVESGRQNIDITQNFIAMPTHLTRSATHRDTD
FT VSEPANPNIKQGRANQPDNNEVPVSEEEPTGERRLPGGSAVHRGFTEFSERNENKIEHF
FT YVPSMHGLSLKEDIHLFTKNLEIPSTADFCKELARYKVMAEAMNYRSASYYSRLLSGVA
FT ILRPHFKFVCRLVTPILESIPLMIVWDDLSQLTTKVSRLSSAFEIIDSDHTKAAIYEVR
FT PSGPTDLLTPSKSHYGMGGDLVIFSGGYGSSALSSPLRLKIEASLLKDSQVGSGEVGVP
FT QGPSSMLSFYYLNEVDIGDINLYSFLGSCKYDSKSVVNSRKYISICPAAGLVHSKGKAA
FT YLGLTASLFSMYNFWKGSYILKVDVLSKGSCAGAISIYVPPPGTSADHYSQSQLDTLPR
FT YELPWRGTGSARFEVENFSWIGWHLTKPQRFVTNEDWFSLNAGVVVVLNQPPTTRAGGS
FT SDIRVIFRIVKFKNLTLKERSTTCDIFTGIKDATYTSPLYDVLDNSISVPASVASDPDI
FT ELDATSSIQASNVLPRSFGAYYAYLLGGAVSGKRWHSYVLPITMGHHRSEIGTTKTGYL
FT NEKLDDTVRVRYSVRNPLHILCAAGAYYATDLLFTLVIDGDFASERAFAQLGLIQTPLM
FT EYYDGYSTDRTLSSEGGHSNQLGVGKSYIQLLVPRRNYRARSITTETATLFFETIGSLS
FT IRFTVSDKIKGVHLFVEAAGPIDVDGYGRGFDIGFTEESYVLMPSLRTAAQ"
XX
SQ Sequence 5344 BP; 1353 A; 1222 C; 1244 G; 1525 T; 0 other;
ab465582 Length: 5344 14-APR-2009 Type: N Check: 7039 ..
1 gattgatcaa gcgaactgga agccccagac aaaataattc tctttctctc
51 tctcaatcac actcgagact tagaacttga tatttcttgt tttatgtcta
101 tttcttctgt tcactttatg atgtgtagga tagcgcctac actacgatac
151 tagggatagc gccctagttc cgatactaag gatagcgcct tagccttctt
201 ttcttgtact ttatttcgat tttgtacctt tgcaatttcg attgcaattt
251 taagtaaata attaaaaacc aaaaagattt tcccatttct ttaatttctt
301 ttttgttttt ctttttattt ttcttctttt catggagatc tacggattct
351 cccccctttc cttccaggac accgagtcct ggaagaactc cgcattcgcg
401 gcctgccgag gccgcaagac ctccttaatt gaggaggttt gtgctgatgg
451 gtccacagtg acccgtgagg tcccggtggg cctcattctc aagggcgtta
501 tggcccaata tcggtccctc ctgtggaccc aattcgtggc ggattccgcc
551 accaccacca aagaccggga gtcctttgac ttctggctct tctgccgccg
601 tgctgaggcg gcacaggaac gggcctatct ggcccgaaag tccaagcgag
651 ccgctaaggc cgcagccctc gatgctgagg gcatcattga tcgctcctat
701 aaggggcgaa catacaaggt ctctactcga ggccttacgt ggaaatctgt
751 gcgtgctgca cagaaggctg ctaggaaagc agctaaatat tttgggtttt
801 ctgtttcaga aaatcctttc tcctgcctcc cgtctgaagg gagatcagtt
851 gctgcaggtg aaactcctgc ttctctctct gtggttttac cacagattga
901 ttgggccgcc cgtaaggcgg cctctcgtaa ggtgcctact gtgggcactg
951 aggatgcacc ctttttaggg ttgctcccgg agtctccccg cctccgtgat
1001 gaggggttgc tctctttgct gagagccaag atcgccactc ttgtggcgag
1051 cagggaccgt caggtccctg taccaaggag ggtcgtcaag acccagaaga
1101 agaactcaca atgtgagttc tttaccgagg aggtgcgcac tacaaagtgc
1151 gttattaacg gtaaaatggg tattccacgg aatcccataa ttcaacgcct
1201 tctccccacc cgcttaatcc aaaggaagcg agttgtggcc aaatttgagc
1251 cacagatagt gagctcctcg agacataagt ttgatatgtc tcatatttat
1301 gatgaacgaa ggtgggttat ttacccatct attatcaaaa ttgagctcaa
1351 ggatgcctac caaactgcac aaaatttggg catcctttcg gacagtgctt
1401 ccgctcttga gcgtgtgcga gccctttcct ctcaccatct agacctagag
1451 agggaggtgc gcgcgctcga acaagagcat tatccggccc caagaaaaac
1501 tgttgctgct agaatttttt ccttctttat ggaggaatat gctctggctc
1551 atgaagaggc caaggaacgc attaggcgac aaaaagaaga taagcggagg
1601 gagcatctct cctttctgcg acacttgaga cgccaagcgt tcgagctttt
1651 agctgccgag cgagccgctt atttgaagaa aatttctgag gctcgtgaaa
1701 tagccattgc cctcaaagaa agggctgaaa aaggaccgcc accacaatta
1751 ttatacattc ctgaatggca cgttgttcaa catgcaaaag cgcatatgga
1801 gggtacttca tatgatcgca cgcttagaga gcatatgtgc caccgttatg
1851 atcagaagct agcagcattt cagaatggtt ctctctctga gagttccaaa
1901 tttgctgctg cctgtggggc gcattttgag cggattttcg gatatgctgt
1951 gcatagaagt gcacgaaccg aaacggtgac tcaggttgct gagtcttctc
2001 caccaccagt aatcaccgca cctgtagggc gaatggttgg aggaaatcca
2051 cctacagaaa caccaggaac agctgccgtt agagcagcta tgcagcgagc
2101 agttgaacgc aatagacctg gcccccgcga atcttctgca atgccggcca
2151 gagaacccct actttcacat agggggcagt attacgctcg ctcactttca
2201 gatagatata acaatatctt ctctcgcaat aatgcataca atctcatgcg
2251 agaaactgat gtgcccatta tggaatttac tttcgggcaa cagcaggata
2301 ttgctatacc tctgtcctcg cgatttggaa accatccgtc tctccacatt
2351 ggtgaattgg aaatcgctgt tcagtcagcg gttctttctg gagtggatac
2401 agcaatggca attatggtct cagatgcttc tcatgataga ctcgaagaag
2451 gtttcttgag tctaaccatt ttgagactag gtgctggatg gatgcgccac
2501 acgatcccta ttggaattac tgtttttcca acggatcctc tagttgatcg
2551 tcttttaaga ttatcagtat tgactggagg ttctccaatg gcagacggta
2601 gacaagtggc caggctccat tatggtttgc ttggccaggc ttatactggc
2651 gctggcgagc agaggttaac tcagtatgcc actcgaagga ttaacgtgcg
2701 tcaaacgcac gtaactcaat tccttgaggg caaccatata catattgctc
2751 gctctgagga tagacagcag ccgttacccc atatgaattt ggagtatcgg
2801 ccactatctg gaagtactag gtatgtggca cgacctggtg gatatcaagc
2851 tgtggaaagt ggtaggcaga acattgatat aacgcaaaat ttcatagcaa
2901 tgcctacgca cttaacaaga agtgccacgc accgagatac tgatgtctcg
2951 gaacccgcaa atccaaacat taagcaggga cgggcgaatc aacctgataa
3001 taatgaagtc cctgtctcag aagaagaacc aaccggcgaa cggcgcctcc
3051 ctggaggttc agctgttcac agaggattta cggaattctc tgagaggaac
3101 gaaaataaaa tagaacattt ttacgttcct tctatgcatg gactgtcact
3151 caaggaagat attcatttat ttaccaagaa tcttgagata ccttctacag
3201 ctgatttctg taaggaattg gccaggtata aggttatggc agaagccatg
3251 aattatagga gcgccagcta ttattctcgt ctactgtccg gggttgcaat
3301 tttgcgacct catttcaaat ttgtgtgtag gctggttact cctattctag
3351 aatctatacc tcttatgata gtctgggacg atttatcaca attaacaaca
3401 aaagtctccc gattatcatc agcctttgaa attattgatt cagatcatac
3451 caaggctgca atatatgagg ttcgaccatc agggcccacg gacttattga
3501 ctccctctaa aagccattat ggaatggggg gggatctcgt tatcttctct
3551 ggtggttatg gttcttctgc cctttcctcg cctttgagac ttaagattga
3601 ggcgagtctt ctcaaagact cgcaagtagg ttctggcgag gttggggtgc
3651 cccaaggacc ctcttctatg ttgtcatttt attatcttaa tgaggtggat
3701 attggggata taaatttgta ttcttttcta ggtagttgta aatacgattc
3751 taagtcagtt gtaaatagta gaaaatatat ttctatttgt ccagcagccg
3801 gccttgttca tagtaaaggt aaggccgctt atttaggttt aacagcttcc
3851 cttttttcca tgtataattt ttggaaggga agttatattt tgaaagtgga
3901 tgttctttca aaagggagtt gtgctggagc aattagtata tatgtgcctc
3951 ctccaggtac aagtgctgat cactactccc aatcgcagtt ggacaccctc
4001 ccacgatatg aattaccttg gaggggaacg ggatctgcca gatttgaggt
4051 tgaaaatttt tcctggattg gttggcattt gaccaaacct cagcgtttcg
4101 taaccaacga agattggttt tcattgaatg ctggggtggt cgtggtgctc
4151 aatcagccac caacaacaag agctggcgga tcaagcgata taagagtgat
4201 ctttcgtatt gtcaaattca aaaacctcac tcttaaagaa cgatccacga
4251 cctgtgatat attcacaggt ataaaggatg caacttatac ttcacctctg
4301 tacgatgtac tggataattc catttcagta ccagcctcag ttgcatccga
4351 cccggacatt gagcttgatg ctacctccag cattcaagcg agcaatgtgc
4401 tcccgagatc atttggcgca tactatgcgt atttattggg tggagcagtg
4451 tccggaaaaa ggtggcactc ttatgtgcta cccataacga tgggacatca
4501 taggagtgaa atcggcacga caaagactgg gtatctaaat gagaaacttg
4551 atgatacagt cagagtcagg tactccgtgc gcaacccatt acatatcctg
4601 tgcgccgcgg gtgcttatta tgccaccgac ctccttttca ctctcgtaat
4651 tgatggagat tttgcatccg aacgagcctt cgctcaactt ggactcatcc
4701 aaactccttt aatggagtat tacgatgggt attccactga tcggactctc
4751 tcatctgagg gaggacactc taaccagttg ggtgtgggca agtcatatat
4801 ccaattactt gtcccaagga ggaattatag ggctagatcc attaccacgg
4851 aaaccgcaac cttgttcttt gaaacgattg gatccctttc aattcgattc
4901 actgtcagtg ataagatcaa gggagtccat ttatttgtgg aggctgcggg
4951 ccctattgat gttgatggtt acgggagagg gtttgacatc ggattcactg
5001 aggaatccta tgttttaatg ccctctctcc gtacagccgc tcagtagcgg
5051 cattaggtaa tgcctgctgg accttaacgc aggattgatc atattgagga
5101 attgggaaag aatttctaga gttctttttc cttctctatg taggtgctgc
5151 ccaccggacc ttgacgtggg ttaatatgta aatactagtg tgtattttct
5201 atttatttgt tttgtttgtt tttcttaaaa taaactggat ttcaaaaagg
5251 gtttctcgag ttcttccctt tccgatccag gaactccgcg tgtttttctt
5301 gatttctgtc gcgtgcggtt acgaccagtg aaagtctggt gacc