Sequence of DPV Satsuma dwarf virus
Navel orange infectious mottling virus genomic RNA, segment RNA 2, complete sequence.
ACC No: AB465583
Dated: 2009-04-14 | Length: 5364 | CRC: -1621691840
ID AB465583; SV 1; linear; genomic RNA; STD; VRL; 5364 BP.
XX
AC AB465583;
XX
DT 14-APR-2009 (Rel. 100, Created)
DT 14-APR-2009 (Rel. 100, Last updated, Version 1)
XX
DE Navel orange infectious mottling virus genomic RNA, segment RNA 2, complete
DE sequence.
XX
KW .
XX
OS Navel orange infectious mottling virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Sadwavirus.
XX
RN [1]
RP 1-5364
RA Iwanami T.;
RT ;
RL Submitted (13-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL Contact:Toru Iwanami National Institute of Fruit Tree Science, Citrus
RL Greening Research Program; Fujimoto 2-1, Tsukuba, Ibaraki 305-8605, Japan
XX
RN [2]
RA Iwanami T.;
RT "Properties and control of Satsuma Dwarf Virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5364
FT /organism="Navel orange infectious mottling virus"
FT /segment="RNA 2"
FT /isolate="NI-1"
FT /mol_type="genomic RNA"
FT /country="Japan:Wakayama"
FT /db_xref="taxon:85516"
FT CDS 325. .5055
FT /codon_start=1
FT /transl_table=1
FT /product="polyprotein"
FT /note="This polyprotein contains movement protein and coat
FT proteins."
FT /protein_id="BAH56591.1"
FT /translation="MEIYGFSPLSFQDTESWKNSAFAACRGCKTYPIEEVGADGLVTVR
FT EVPVGLMLKGVMAQYRSLLWTQFVADSATTTVDRKSFDFWLFCRRAEVAALRAFEARKK
FT KRAAKAAALDAEGIIDRSYKGRSYKVSTRGLSWKSVRDAQKAARRAAKNFGFSICENSF
FT SVLPSEGSKVTAGETPAASVVLPQICWADRKAALKSTSPVDVESLPFLGLLPESPRLRN
FT AGLLSSLRAKIAILTASRDKQVPVPKRVVKTPKQDSVVESFEEATSVVGCIINGQMGVP
FT KNPIIQRLLPQKRVFRSRIITPFRSQQLCSSRHKYDIAHQNDEKRWIIYPSIIEISSRA
FT AYETAARLGLLPDCAQALERVRAFSSHHLDIEREVRRLELEEHPAPRKSVIAKVFKFFL
FT EEYALAYDEAEQALRTQREDKRREHLEFMRALRRNAAEMLSKERSLAREAILESQRKCD
FT ELKRHAEEGPMPLLMYKPEWHVTEIACQAMANSSERQTEKEMLQQRYRSSYSNTIYCPD
FT SFAAKRFLKAADAHFERIFGYAVHRGTRTETMTQVAESPPPIRTAPTGRMVGGNLPVES
FT PGAAAVRAAMHRAVERNRPGPGESSAMPAREPLLSHRGQYYARSLSDRYNNIFSRNNAY
FT NLMRETDVPIMEFTFGQQQDIAIPLSTRFGNHPSLHIGELEIAVQSAVLTGVDTAMVIM
FT VSDATHDRLEEGFLSLTILRLGAGWMRHTIPIGITVFPTDPLVDRILRLSVLTGGSPMA
FT DGRQVARLHYGLLGQAYTGAGEQRLTQYATRRINVRQTHVTQFLEGNHIHIARSEDRQQ
FT PLPHMNLEYRPLSGSTRYVARPGGYAAIGGGRQSVDITQNFISMPTHLTRSATLQDDDI
FT LHPLNPNVTIESGDNNNNNCPTGNVDNREIPVVEEEEERRRPHGSAIQRGFAEFSERNE
FT NVIEHLYVPSMHGLSLREDIHLFTENLAIPSTADFCKELARYNVLAKATSFKSASYYSR
FT LLSGVAILRPHFKFTFRLVTPILESIPLLVVWDDLSELTTKVSRLSAAFQVIDSDHTKA
FT AVYEVRPSGPTDLLTPSKHNYGMGGDIVIFSGGYGSSSLTSALRLKVEASLLKDSQLGS
FT GEVSIPQGPSSMLSFSYLNEVDLGDLDLHCFLGSCKYNGTSPVGGRKYISVCPAAGLVH
FT NKGKAAYLGLTASLFSMYNFWRGSYILKVDVLSKGSCAGAISIYVPPPGTSADHYTQSQ
FT LDTLPRFELAWRGTGTARFEVENFSWVGWHITKPQRFTTNEDWFSLNSGLVVVLNQPPT
FT TRAGGSSDIRVMFRIVKFKNLTLRERSTTCDIFTGIKDSVYTHPLVDVLDENISAPASI
FT STDPEVGFESTSSVQAASPLISKNFGAYYAYLLGGASSGKRWHSYVLPITMGHHRSEIG
FT STKTGYLNEALDQTVRIRYSLRNPLHILCSAGAYYATDLLFTLVIDGDFTAERAYAQLG
FT LIQTPLREFYEGYSTDRTLTSEGGSVNQLGVGKSYIQLLVPRRNYRARSITTETAALFI
FT ETIGSLSVRFTVSDKIKGVHLFVEAAGPIDIDGYGRGADIGFTESFVLMPSLRTAA"
XX
SQ Sequence 5364 BP; 1336 A; 1247 C; 1282 G; 1499 T; 0 other;
ab465583 Length: 5364 14-APR-2009 Type: N Check: 3111 ..
1 gattgatcaa gcgaactgaa tgccccagac aaaaacaatc tctctctctc
51 tttctctctc aacctgaaag atttgaaaaa cgttttcatg tctacttttg
101 ctttctgttc acttttgatg tgtaggatag cgcctacact acgaaactag
151 ggatagcgcc ctagccctga atcttgggat agcgcccaag cttttcctcg
201 ctttatttcg atttagcttt tgtaatttcg attacttgta tttatttaat
251 ttaaaaaaac caaaaagatt ttcttatttt tttaatttct tttttgtttt
301 ttcttattgc tttttatctc cgtaatggag atttatggtt tttcccccct
351 ctccttccag gacaccgagt cctggaagaa ttctgctttc gcagcctgcc
401 gaggctgcaa gacctacccc atcgaggagg taggtgctga cggactggtg
451 acagtccggg aggtcccggt gggcctcatg ctgaagggcg taatggccca
501 atatcggtcc ctcttgtgga cccaatttgt ggcggactcc gccactacca
551 ccgtcgaccg gaagtccttc gacttctggc tcttctgccg ccgtgctgag
601 gtggcagcac ttagggcctt cgaggcccga aagaagaagc gcgccgctaa
651 ggccgcagcc ctcgatgctg agggcattat cgatcgctcc tacaaggggc
701 gatcctacaa ggtctctacg cgaggcctct catggaaatc tgtgcgtgat
751 gcacagaagg ctgccaggag agcagccaaa aactttggat tctcgatctg
801 cgagaattct ttctccgtgc tcccatctga agggagtaag gttactgcag
851 gtgaaactcc tgctgcgtct gtggttctgc cacagatttg ctgggctgac
901 cgcaaggcag ctttgaagtc cacctctcct gtggacgtag agagcttacc
951 cttcttaggg ttgctcccgg agtctccccg cctccgtaat gcgggattgc
1001 tctcttcatt gagagctaag atcgcgattc tcaccgcgag cagggacaaa
1051 caggtccctg tccccaagag ggtcgtcaag accccaaagc aggactccgt
1101 cgtggagtcc tttgaggaag ctacatccgt tgtcgggtgt attataaatg
1151 gtcagatggg cgttccaaag aaccccatca tacaacgcct tttgccccag
1201 aagcgcgtgt ttcgatctcg gataattaca ccgtttagat cgcagcagct
1251 atgctcgtcc cgccataaat atgatatagc tcatcaaaat gatgagaagc
1301 ggtggataat ttatccatcc atcattgaaa tttcgagcag agctgcttat
1351 gagacggcag cacgcctggg actgttgcct gattgcgctc aagcgcttga
1401 gagagttcgt gccttttcct ctcaccatct agacatagag agggaagtgc
1451 gcagactcga actggaggag catccagccc ctaggaagag tgttattgcc
1501 aaggtattta aattcttcct cgaagaatat gccttggctt atgatgaggc
1551 tgagcaagca ttgcgtactc aacgtgaaga caagcgcaga gaacatttgg
1601 aattcatgcg cgcattacgg cgcaatgctg ctgagatgct atctaaagag
1651 cgcagtctgg caagagaagc tatccttgaa tctcaacgta aatgcgatga
1701 gctcaaacgg cacgcagagg aggggcccat gcccctactc atgtacaagc
1751 ccgaatggca tgttactgaa atagcatgcc aggctatggc caatagctct
1801 gagcgtcaaa ctgaaaagga gatgcttcaa cagaggtatc gcagcagcta
1851 ctccaacact atctattgcc cagattcttt tgcggcaaag agatttttaa
1901 aagctgctga tgcccacttc gaacgcattt tcggatatgc tgtgcacaga
1951 ggcacaagaa ccgaaacgat gactcaggtt gctgagtctc ctccaccgat
2001 tagaaccgct cccacagggc gaatggtcgg aggaaattta cctgtggaat
2051 ctccaggggc agccgccgta cgagctgcca tgcatcgagc cgtcgaaaga
2101 aacagacctg gacccggtga atcttctgca atgccggcca gagaacccct
2151 attatctcat aggggacaat attatgctcg atccttgtcg gacagatata
2201 ataatatctt ctcgcgcaat aacgcttaca atcttatgcg tgaaactgat
2251 gtgcccataa tggaattcac tttcgggcaa caacaagata ttgctattcc
2301 tttgtccacg cgtttcggaa atcatccgtc tctccacata ggcgaacttg
2351 aaattgctgt ccaatcagca gtactaactg gagttgacac tgccatggta
2401 atcatggttt ccgatgctac ccatgatcgt ttagaagagg gctttttgag
2451 ccttactatc ttaaggttgg gagcaggatg gatgcgccat acaataccaa
2501 taggtatcac cgtctttcca acggatcccc tggtagatag gattctcaga
2551 ctatctgttc taactggggg ctctccaatg gccgacggca gacaagttgc
2601 caggctccac tatggtctgc ttggccaagc atacacgggc gcaggcgagc
2651 aaaggttaac acaatatgcc actcggagaa ttaatgtgcg tcagacgcac
2701 gtaactcaat tcttggaggg caatcatatc catattgctc gctcagagga
2751 cagacagcag ccgctccctc acatgaactt ggagtaccgt ccgctgtctg
2801 gttcgacaag gtacgtggca cgacctggag gttatgctgc tattgggggt
2851 ggtaggcaaa gcgtagatat aacgcaaaac tttataagca tgcctacgca
2901 cctcactaga agtgccacgt tgcaagatga tgatatcttg cacccgttga
2951 atccaaatgt caccattgaa agtggtgaca ataataataa taattgtccc
3001 accggtaatg tagataatag agaaataccg gtggttgagg aggaggaaga
3051 gagaaggcgc ccacatggga gtgccattca gcgtggtttt gcagaattct
3101 cagagcgtaa tgaaaatgtg atagagcatc tatatgttcc atcaatgcac
3151 ggattatctt tgcgagaaga tatccatttg tttaccgaga atttggccat
3201 accttcaaca gctgatttct gcaaggaatt agctcgatat aatgtcttgg
3251 ccaaagccac aagttttaag agtgcaagct attattcacg attactttct
3301 ggggtggcga ttctgcgacc tcattttaaa tttacgttta ggcttgttac
3351 tcctatcctc gagtccatac cacttctcgt agtctgggat gacctttctg
3401 agcttacaac caaagtttcc agactctcag ccgcctttca agtaattgat
3451 tcagatcata cgaaggcggc tgtttatgaa gttcgtccat ccggaccaac
3501 ggacttactc accccaagca aacataatta tggcatgggg ggagatatag
3551 tcatcttttc cggtgggtat ggttcttcct cgctgacttc tgctttgcgc
3601 cttaaagtgg aggcgagtct actgaaggat tcgcaactag gatcaggaga
3651 agttagtata ccccaaggtc cgtcttctat gctttcattc agttatctta
3701 atgaagttga tcttggggac ttagatttac actgtttttt aggtagttgt
3751 aaatacaatg gtacttcgcc cgttggtggg cgaaagtata tatccgtgtg
3801 tcctgcggct ggtcttgtac ataataaggg taaagccgct tatttaggtc
3851 ttacggcttc ccttttttcc atgtacaatt tttggagggg aagctacatt
3901 cttaaagtag atgttctttc aaaggggagc tgcgctggag ctataagtat
3951 ttatgttcct ccccctggaa ccagtgctga ccactatacg cagtcccagt
4001 tggacaccct ccccagattt gaattagcct ggaggggaac tggaactgcg
4051 agatttgagg tggaaaattt ttcctgggtt ggttggcata taacgaagcc
4101 acagagattc accaccaatg aagattggtt ttctttgaac tctggactgg
4151 ttgttgtgct caaccaacct ccaactactc gcgctggagg ttctagtgat
4201 atacgggtca tgttcagaat tgttaaattt aaaaacctga ccctgagaga
4251 acgttctact acctgtgata tatttacagg tatcaaagac tcggtgtata
4301 ctcatcccct ggtggatgtt cttgacgaga acatttcggc accagcatcg
4351 atttccactg accctgaagt gggattcgaa tcaacatcga gcgtgcaagc
4401 agcttcgccc ctaatcagca aaaattttgg agcatactat gcttatctat
4451 tgggtggggc aagctcaggg aagaggtggc acagttatgt gctacctata
4501 acaatgggac atcataggag tgaaattggg agtaccaaga ccggatatct
4551 caacgaagca cttgatcaaa cggtcagaat caggtattct ttgcggaacc
4601 cattgcatat tttatgttcc gccggggctt attatgccac cgaccttctc
4651 tttactctgg taattgacgg agatttcacc gctgaacgag cctacgctca
4701 attgggcctc atacaaactc ctctgaggga gttttacgag ggttattcaa
4751 ccgatagaac cctcacttct gaagggggtt ctgtaaacca attgggtgtg
4801 ggcaagtcat atattcaatt acttgtcccg agaaggaatt atagggctag
4851 atccattacc acggaaacag cagccttgtt tatcgagact attggatctc
4901 tctcggtccg cttcactgtt agtgataaga ttaagggagt ccatttattc
4951 gttgaggctg ctggccctat tgatattgat ggatatggac gaggagctga
5001 cattggattc actgaatctt ttgttctaat gccctctctt cgtaccgctg
5051 cctaacttgg tagcaatgag gtgatgccca ccggacctta acgtgggttt
5101 atgtatgtat gtatatagtg aggtgtgttt cttttcttct ctttttggtg
5151 ggataggtgt gcaccctatc ggttccagtg cgcgtgctgg aacattgcaa
5201 agttttctgt cgtgtgttta ctttgttttc ttttgtttgt ttttatttaa
5251 aataaactgg atttcaatag agggtttctt gaactcttcc ctcttccgat
5301 ccaggagttt ggtgtgtttt tcttgatttc tgcaccggtt tcaatcagtg
5351 aaaatctgat ggcc