Sequence of DPV Iris yellow spot virus

Iris yellow spot virus N gene for nucleocapsid protein, complete cds.

ACC No: AB505813

Dated: 2009-06-03 | Length: 890 | CRC: -1219495136

                
ID   AB505813; SV 1; linear; genomic RNA; STD; VRL; 890 BP.
XX
AC   AB505813;
XX
DT   03-JUN-2009 (Rel. 101, Created)
DT   03-JUN-2009 (Rel. 101, Last updated, Version 1)
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DE   Iris yellow spot virus N gene for nucleocapsid protein, complete cds.
XX
KW   .
XX
OS   Iris yellow spot virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-890
RA   Yasuda F., Inamoto S., Tanaka A.;
RT   ;
RL   Submitted (30-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Fumitoshi Yasuda Tottori Prefectural Agriculture and Forest
RL   Research Institute, Horticultural Experiment Center; Yurasyuku 2048,
RL   Hokuei, Tottori 689-2221, Japan
XX
RN   [2]
RA   Yasuda F., Inamoto S., Tanaka A.;
RT   "Necrotic streak disease of rakkyo caused by Iris yellow spot virus
RT   (IYSV)";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .890
FT                   /organism="Iris yellow spot virus"
FT                   /host="Allium chinense, rakkyo"
FT                   /isolate="HR-0801"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Tottori, Hokuei"
FT                   /collection_date="15-Nov-2008"
FT                   /PCR_primers="fwd_name: IY-NP-V, fwd_seq:
FT                   cttaactaacacaaatactg, rev_name: IYS3'T, rev_seq:
FT                   agagcaatcgaggtataaaac"
FT                   /db_xref="taxon:60456"
FT   CDS             complement(20. .841)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="BAH70268.1"
FT                   /translation="MSTVRVKPSEIEKLLSGGDVDVVIESDETEGFNFKNFVLANEGVQ
FT                   MTFNNGYTILRNRAGIYKTIKTGKFTFQGKTIVIPSANVSPNQDDWTFRRLEGFIRARM
FT                   LVELFETKDEKEKQKMYEKICGLPLVSAYGLKPSAEFNATTARIMLTLGGPLTLLASLD
FT                   IFAAAALPLAYFQNVKKEALGISRFSTYEQLCKVARVMAAKEFKFTEKYKKIFDETVKI
FT                   LTDCTPGTSGAASLIKFNEQIKILEGAFGKIVEDIGESSKPKNPSKKDRYN"
XX
SQ   Sequence 890 BP; 243 A; 187 C; 161 G; 299 T; 0 other;

ab505813 Length: 890  03-JUN-2009  Type: N  Check: 2821  ..

       1  atcaacaata tataataaat taattatatc tatccttctt ggagggattt
      51  ttgggtttag aagactcacc aatgtcttca acaatctttc caaaagcacc
     101  ttcaagaatt ttaatctgtt cattgaattt aatcaatgaa gcagcacccg
     151  aagttccagg agtgcagtca gtgaggatct tgacagtttc atcaaaaatc
     201  tttttgtatt tctctgtgaa tttgaattcc tttgctgcca tgactcttgc
     251  aactttgcag agttgctcgt aagttgagaa tctgcttata ccgagtgctt
     301  ctttttttac attctggaaa taagctaatg gaagggcagc tgcagcgaag
     351  atgtcaagac ttgccagcaa agtgagagga ccacctagtg tcagcatgat
     401  cctagctgta gttgcattaa actcggcact aggtttcaaa ccatatgcac
     451  ttaccagagg aagcccgcag attttttcat acattttctg cttctccttc
     501  tcgtcctttg tttcaaacag ttctacgagc attctagctc tgataaagcc
     551  ttctaacctc ctgaatgtcc aatcatcttg attggggctc acattagcac
     601  taggaataac aatagtcttt ccttggaatg tgaatttccc tgtttttata
     651  gtcttgtaaa tgcctgctct gtttctgaga attgtgtagc cattattgaa
     701  tgtcatttgg acaccttcgt ttgccaacac aaaattcttg aaattgaatc
     751  cttcagtctc atcagattca attaccacat ccacatctcc gccagacaga
     801  agtttctcga tttctgacgg tttcacccta acggtagaca tggtgaatac
     851  ttaggaagca gtttactttg cagaagttgt ttgaatgttt