Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus gene for polyprotein, P1, HC-Pro and P3 region, partial cds, isolate: 2-S.
ACC No: AB509455
Dated: 2010-05-09 | Length: 4006 | CRC: -157060303
ID AB509455; SV 1; linear; genomic RNA; STD; VRL; 4006 BP.
XX
AC AB509455;
XX
DT 09-MAY-2010 (Rel. 104, Created)
DT 09-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE Sweet potato feathery mottle virus gene for polyprotein, P1, HC-Pro and P3
DE region, partial cds, isolate: 2-S.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-4006
RA Yamasaki S., Sakai J., Fuji S., Hanada K.;
RT ;
RL Submitted (19-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shuichi Yamasaki Oita Prefectural Agriculture, Forestry and
RL Fisheries Research Center, Safety Farming Research institute; Kitausa 65,
RL Usa, Oita 872-0103, Japan
XX
RN [2]
RX PUBMED; 20336334.
RA Yamasaki S., Sakai J., Fuji S., Kamisoyama S., Emoto K., Ohshima K.,
RA Hanada K.;
RT "Comparisons among isolates of Sweet potato feathery mottle virus using
RT complete genomic RNA sequences";
RL Arch. Virol. 155(5):795-800(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4006
FT /organism="Sweet potato feathery mottle virus"
FT /strain="RC"
FT /isolate="2-S"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12844"
FT 5'UTR 1. .117
FT CDS 118. .>4006
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="BAJ07196.1"
FT /translation="MATVMASAKPAGKRKLTWKECCNKWGRAAMEQQQQQQSKKTVHLG
FT RDHLAAYLLAFVPETEWHKYYYGSRGGPSPALLILKGAIEHGEVYKWESELTFCAECDD
FT VLDGHNCDSCGHRHIKRDDNIADNMNAIARALGGYDAYYASNWAVYETAKYELDQVAPT
FT AGMLYKQAKEAEKLLGKRPTRREIQEVEDLWAEYEEAAAREAAEASEASNGYATSEVAN
FT KNAYLSDGEDDEAFPPLVVTVEKAVPATTIIESTPEVGKTIEVQTPLEPVPEVLAATTF
FT VEATIEGKDAPTGSIQFGTIVCALEPTKASEAEIAKEPTTGFFFGTIPAIVPLPTIPFL
FT KLESTIVEPIATPMVEVTSSEIVKVPIATPTEVEKASKAPLPKHLYPWTAKTQTPGEVH
FT HKMVRKWVQKTQQAAAEKEKLVWKKLDEQLATRNEIRKDLKVKWRWGLYRLVKKTRKDN
FT QRQRRQRRMEKEQQLLMAMPPQVLTGISIAGGPSASLEMTPTPNGKIFCTPSMKKKKTL
FT KSPKLTQEKIHELTQAVLKIACRKRMSIELVDKKSTKGQYKKFQGANYLFLHLKHMEGL
FT RESVDLRIHTTTQNLVLQAAKVGAWKRTVKTTMLSKGSSGLVLNPDKLLGPRGHAPHGM
FT LVVRGALRGVLYDARMKLGRSVLPYIIQYSSTMERFLSGFDNKFKQMRQTDLNHVCESS
FT YDAEQAGSVAAISHHMLYPMGRTTCKFCINNVEDMSRDEWCEYVRSFISRNKILCQSEY
FT KNFVHLPQIMDFLSDSLVNTNKNLKAFNEIQNLIGDRTDAPFTSVCEVNKVLVKGGRAK
FT PDELIKASENLLEVARYLKNRTENIKKGSLQSFRNKISQKSSVNLALMCDNQLDKNGNL
FT IWGERGYHSKRFFANYFDVIDPSQGYEKYVIRENPNGSRKLAIGKLIVSTNFSVFREQM
FT KGEPIQKQKLDNHCTSLRDGNFVYPCCCVTLDDGQPLESEFKLPTKNHLVIGNSGDPKY
FT VDMPPEISKKMYIAKDGYCYVNIFLAMLVNVNEAEAKDFTKQVRDVLMEKLGKWPTMFD
FT VATACAFMSVFYPETRNAELPRILVDHSTKTMHVVDSFGSLSTGYHVLKANTVSQLIQF
FT SSSSLESEMKHYIVGGVTALPDVQERCIRTIIKGVYKPDVMYTILSEDPYALLLSVMSP
FT RILLALLNSGSLDRSMEAWITEDQEVAVIIGTLQELAKKVSTSRVLEKQLKVIESQAHT
FT LLFDPAFVRSKTPSFALSQKIIRGLAEGRESNRVLYEQGHSIASYAASHELMEKIWDRL
FT LKEEYEGLPWHG"
FT mat_peptide 118. .2109
FT /gene="P1"
FT mat_peptide 2110. .3483
FT /gene="HC-Pro"
FT /note="a protein with helper component activity and
FT proteolytic activity"
FT mat_peptide 3484. .>4006
FT /gene="P3"
XX
SQ Sequence 4006 BP; 1311 A; 787 C; 931 G; 977 T; 0 other;
ab509455 Length: 4006 09-MAY-2010 Type: N Check: 2956 ..
1 aaaaataaca caacacaata caacacaaca aaactcaatc caacacaatt
51 tgcaatctac ctgctattag aaaatttcag tcaactgcaa tcacttctga
101 gttttcacaa ttctgaaatg gcaactgtaa tggcatctgc gaaaccggct
151 ggtaagcgaa agcttacgtg gaaggagtgc tgcaacaagt gggggagagc
201 tgcaatggaa cagcagcaac agcagcagtc taagaagact gtacacttgg
251 gacgcgacca tctggccgca tatctccttg cgtttgtgcc agaaactgaa
301 tggcacaaat attattatgg cagtcgtgga ggaccatccc ctgctctgct
351 cattctgaag ggcgccattg aacatggcga agtttacaag tgggagtctg
401 agctcacttt ttgtgctgaa tgtgatgatg tcctggatgg acataattgt
451 gatagctgtg gacaccgcca cattaaacgc gatgataaca tcgcagataa
501 catgaacgcc attgctaggg cgttgggagg atatgatgca tactatgcat
551 ctaactgggc agtatatgaa actgccaagt atgagcttga ccaagtcgca
601 cctacagctg gtatgcttta caagcaggcc aaggaggctg agaaattgtt
651 ggggaaacgc ccaacaagac gggagattca ggaggttgag gatctctggg
701 ctgagtatga ggaagctgct gcaagggagg cagctgaggc gtctgaggcc
751 tcaaatggat atgccacatc tgaggtggca aataagaatg cgtaccttag
801 tgatggagag gatgatgagg cattcccacc tcttgtggtg actgttgaga
851 aggctgtgcc tgccacaacc attattgaat cgactccaga agtgggtaag
901 actattgagg ttcagacacc tctagagcct gtgccggaag tattagcagc
951 aaccacattt gtggaggcaa ctattgaagg aaaagatgca ccaactggta
1001 gcatccaatt cggcacaatt gtttgcgcat tggagccaac taaggcctcg
1051 gaagctgaaa tcgccaagga accaaccact ggtttcttct ttggtactat
1101 ccctgctatc gtcccacttc caactattcc attcctcaag ttagaatcta
1151 ctattgtaga acctattgcc acacctatgg tggaggtcac aagtagtgaa
1201 attgtaaaag tcccgatcgc aactcccact gaggtggaaa aggcatccaa
1251 ggcaccatta ccaaagcatt tatacccttg gacagctaaa actcaaacac
1301 ctggcgaggt gcaccacaag atggtgcgta aatgggttca gaaaacccag
1351 caagctgcag cggagaagga aaaacttgtt tggaaaaaac tggacgaaca
1401 attggccaca aggaacgaga tcagaaaaga tctcaaagta aaatggaggt
1451 ggggactcta cagactagtc aagaagacca ggaaggacaa ccaaagacag
1501 cgccgacaga ggcgcatgga gaaggaacag caattattga tggctatgcc
1551 acctcaagtt ctgacgggca tctccattgc tgggggtcca tcggcgagtc
1601 tggaaatgac tccaactccg aatgggaaga ttttctgcac gccttccatg
1651 aagaagaaga aaactttaaa atctcccaaa ttaacacaag agaaaattca
1701 cgagctcacg caggcagttc tgaaaattgc gtgcagaaaa aggatgagca
1751 tagaattggt ggacaagaag tccacaaaag ggcagtacaa gaaatttcaa
1801 ggagcaaatt atttgttcct tcatttaaaa catatggaag gcttaagaga
1851 gtcagtggat ttaagaattc atacaacaac ccaaaacctc gtacttcaag
1901 ctgccaaggt tggggcatgg aaaagaactg taaagacaac aatgttgtcc
1951 aaaggctcaa gtggcctggt gttgaatcca gacaaactgt tgggcccaag
2001 aggccatgca ccacacggaa tgctcgtggt gcgtggggct ttacgaggag
2051 ttctatacga cgcacgaatg aaacttggta gatctgttct accatacatc
2101 atccagtata gctctactat ggaaagattt ctgtcaggct ttgataataa
2151 atttaaacaa atgagacaga cagatctgaa ccacgtatgt gaatcgagtt
2201 atgatgctga gcaagcagga tctgtagctg caatttcaca tcatatgctc
2251 tatccgatgg gaagaaccac ttgtaaattt tgtataaata atgtagaaga
2301 catgagtaga gacgagtggt gtgaatatgt tagatctttc atcagtagga
2351 ataaaatatt atgtcagtct gagtataaga attttgtaca tttacctcaa
2401 ataatggatt ttctatctga ttcacttgtg aatacaaata aaaacctgaa
2451 agcgtttaat gaaatccaga accttattgg cgataggact gatgcgccat
2501 tcacaagtgt gtgtgaggtt aataaagtat tagtcaaagg cggtcgagct
2551 aaacctgacg agctaattaa agcatcagaa aaccttttgg aagtggctcg
2601 atatttgaaa aaccgcaccg agaacatcaa gaaaggttca ctacagtctt
2651 ttaggaataa gatatcacag aaatcatcag tgaatctagc cttaatgtgt
2701 gacaatcaac tggacaagaa tggcaattta atatggggtg aacggggtta
2751 tcactcaaaa agattctttg ccaactattt tgatgttatt gacccatctc
2801 aagggtatga gaaatatgtg attagagaga atccaaatgg atctcggaag
2851 ttggcaattg gaaagttgat agtgtccact aacttttctg tattcaggga
2901 gcaaatgaaa ggcgagccca ttcagaaaca aaaactagac aatcattgca
2951 ctagcctgcg tgatggaaat ttcgtatacc catgttgttg tgtgacacta
3001 gatgatggac aacctcttga atcagaattt aagttaccaa cgaagaatca
3051 cttggtaatt ggaaattcag gagatcccaa atatgttgac atgccgccag
3101 agattagcaa gaaaatgtac atcgcaaagg atggttattg ttatgtaaac
3151 atctttctag ctatgcttgt taatgtaaac gaagccgagg ctaaagattt
3201 cactaaacaa gtgcgagatg tgttgatgga aaaattgggc aaatggccaa
3251 caatgtttga cgtagccact gcatgtgcat tcatgtcagt attctatcct
3301 gaaacaagaa atgctgaact tccaagaatt ctagttgatc actcaactaa
3351 aactatgcat gttgtggact cttttggctc attaagcaca ggatatcatg
3401 tcctgaaagc aaacacagtg agtcaattaa ttcagttctc aagtagctct
3451 ctggagtctg agatgaaaca ctacatagta ggcggggtta cagcattgcc
3501 agacgtccaa gaaaggtgca tcagaacaat tataaaagga gtatacaaac
3551 cagatgttat gtatactatt ctatctgagg atccatacgc actcttatta
3601 agtgtgatgt caccacgcat actcttagcc ttactcaaca gcggatcact
3651 ggatagatca atggaagcat ggataacgga agatcaggaa gttgctgtaa
3701 tcataggtac actacaggag cttgcaaaga aggtatctac ttctagggta
3751 ctcgaaaagc aacttaaagt gatagagagt caagcacaca ctctattatt
3801 tgatccagcg tttgtgcgca gtaaaacccc aagctttgca ctctcacaga
3851 aaatcattag aggcctagca gagggaagag aatcaaatag agtgctctat
3901 gaacaaggac attcaattgc gtcttatgca gcctcacatg agcttatgga
3951 aaaaatttgg gatcgtcttt taaaggagga atacgaagga ctgccttggc
4001 atggaa