Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus gene for polyprotein, P1, HC-Pro and P3 region, partial cds, isolate: 19-S.
ACC No: AB509457
Dated: 2010-05-09 | Length: 4005 | CRC: -1270813943
ID AB509457; SV 1; linear; genomic RNA; STD; VRL; 4005 BP.
XX
AC AB509457;
XX
DT 09-MAY-2010 (Rel. 104, Created)
DT 09-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE Sweet potato feathery mottle virus gene for polyprotein, P1, HC-Pro and P3
DE region, partial cds, isolate: 19-S.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-4005
RA Yamasaki S., Sakai J., Fuji S., Hanada K.;
RT ;
RL Submitted (19-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shuichi Yamasaki Oita Prefectural Agriculture, Forestry and
RL Fisheries Research Center, Safety Farming Research institute; Kitausa 65,
RL Usa, Oita 872-0103, Japan
XX
RN [2]
RX PUBMED; 20336334.
RA Yamasaki S., Sakai J., Fuji S., Kamisoyama S., Emoto K., Ohshima K.,
RA Hanada K.;
RT "Comparisons among isolates of Sweet potato feathery mottle virus using
RT complete genomic RNA sequences";
RL Arch. Virol. 155(5):795-800(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4005
FT /organism="Sweet potato feathery mottle virus"
FT /strain="RC"
FT /isolate="19-S"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12844"
FT 5'UTR 1. .117
FT CDS 118. .>4005
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="BAJ07198.1"
FT /translation="MATVMASAKPAGKRKLTWKECCNKWGRAAMEQQQQQQSKKTVHLG
FT RDHLAAYLLAFVPETEWHKYYYGSRGGPSPALLILKGAIEHGEVYKWESELTFCAECDD
FT VLDGHNCDSCGHRHIKRDDNIADNMNAIARALGGYDAYYASNWAVYETAKYELDQVAPT
FT AGMLYKQAKEAEKLLGKRPTRREIQEVEDLWAEYEEAAAREAAEASEASNGYATSEVAN
FT KNAYLSDGEDDEAFPPLVVTAEKVVPATTIIESTPEVGKTIEVQTPLEPVPEVLAATTF
FT VEATIEGKDAPTSSIQFGTIVCALEPTKASEAEIAKEPTTGFFFGTIPAIVPLPTIPLL
FT KLESTIVEPIATPMVEVTSSEIVKVPIATPTEVEKASKAPLPKHLYPWTAKTQIPGEVH
FT HKMVRKWVQKTQHAATEKEKLVWKKLDEQLATRNEIRKDLKVKWRWGLYRLVKKTRKDN
FT QRQRRQRRMAKEQQLLMAMPPQVLTGISIAGGPSASLEMTPTPNGKIFCTPSMKKKKTL
FT KSPKLTQEKIHELTQAVLKIACRKRMSIELVDKKSTKGQYKKFQGANYLFLHLKHMEGL
FT RESVDLRIHTTTQNLVLQAAKVGAWKRTVKTTMLSKGSSGLVLNPDKLLGPRGHAPHGM
FT LVVRGALRGVLYDARMKLGRSVLPYIIQYSSTMERFLSGFDNKFKQMRQTDLNHVCESS
FT YDAEQAGSVAAISHHMLYPMGRTTCKFCINNVEDMSRDEWCEYVRSFISRNKTLCQSEY
FT KNFVHLPQIMDFLSDSLVNTNKNLKAFNEIQNLIGDRTDAPFTSVCEVNKVLVKGGRAK
FT PDELIKASENLLEVARYLKNRTENIKKGSLQSFRNKISQKSSVNLALMCDNQLDKNGNL
FT IWGERGYHSKRFFANYFDVIDPSQGYEKYVIRENPNGSRKLAIGKLIVSTNFSVFREQM
FT KGEPIQKQKLDNHCTSLRDGNFVYPCCCVTLDDGQPLESEFKLPTKNHLVIGNSGDPKY
FT VDMPPEISKKMYIAKDGYCYVNIFLAMLVNVNEAEAKDFTKQVRDVLMEKLGKWPTMFD
FT VATACAFMSVFYPETRNAELPRILVDHSTKTMHVVDSFGSLSTGYHVLKANTVSQLIQF
FT SSSSLESEMKHYIVGGVTALPDVQERCIRTIIKGVYKPDVMYTILSEDPYALLLSVMSP
FT RILLALLNSGSLDRSMEAWITEDQEVAVIIGTLQELAKKVSTSRVLEKQLKVIESQAHT
FT LLFDPAFVRSRTPSFALSQKIIRGLAEGRESNRVLYEQGHSIASYAASHELMEKIWDRL
FT LKEEYEGLPWHG"
FT mat_peptide 118. .2109
FT /gene="P1"
FT mat_peptide 2110. .3483
FT /gene="HC-Pro"
FT /note="a protein with helper component activity and
FT proteolytic activity"
FT mat_peptide 3484. .>4005
FT /gene="P3"
XX
SQ Sequence 4005 BP; 1310 A; 791 C; 927 G; 977 T; 0 other;
ab509457 Length: 4005 09-MAY-2010 Type: N Check: 9941 ..
1 aaaaataaca caacacaata caacacaaca aaactcaatc caacacaatt
51 tgcaatctac ctgctattag aaaatttcag tcaactacaa tcacttctga
101 gtcttcacaa ttctgaaatg gcaactgtaa tggcatctgc gaaaccggct
151 ggtaagcgaa agcttacgtg gaaggagtgc tgcaacaagt gggggagagc
201 tgcaatggaa cagcagcaac agcagcagtc taagaagact gtacacttgg
251 ggcgcgacca tctggccgca tatctccttg cgtttgtgcc agaaactgaa
301 tggcacaaat attattatgg cagtcgtgga ggaccatccc ctgctctgct
351 cattttgaag ggcgccattg aacatggcga agtttacaag tgggagtctg
401 agctcacttt ttgtgctgaa tgtgatgatg tcctggatgg acataattgt
451 gatagctgtg gacaccgcca cattaaacgc gatgataaca tcgcagataa
501 catgaacgcc attgctaggg cgttgggagg gtacgatgca tactatgcat
551 ctaactgggc agtatatgaa actgccaagt atgagcttga ccaagtcgca
601 cctacagctg gtatgcttta caagcaggcc aaggaggctg agaaattgtt
651 ggggaaacgc ccaacaagac gggagattca ggaggttgag gacctctggg
701 ctgagtatga ggaagctgct gcaagggagg cagctgaggc gtctgaggcc
751 tcaaatggat atgccacatc tgaggtggca aataagaatg cgtaccttag
801 tgatggagag gatgatgagg cattcccacc tcttgtggtg actgccgaga
851 aggttgtgcc tgccacaacc attattgaat cgactccaga agtgggtaag
901 actattgagg ttcagacacc tcttgaacct gtgccggaag tattagcagc
951 aaccacattt gtggaggcaa ctattgaagg aaaagatgca ccaactagta
1001 gcatccaatt cggcacaatc gtttgcgcat tggaaccaac taaggcctcg
1051 gaagctgaaa tcgccaagga accaaccact ggtttcttct ttggtactat
1101 ccctgctatc gtcccacttc caactattcc actcctcaag ttagaatcta
1151 ctattgtaga acctattgcc acacctatgg tggaggtcac aagtagtgaa
1201 attgtaaaag tcccgatcgc aacccccact gaggtggaaa aggcatccaa
1251 ggcaccatta ccaaaacatt tatacccttg gacagctaaa actcaaatac
1301 ctggcgaggt gcaccacaag atggtgcgta aatgggttca gaaaacccag
1351 catgctgcaa cggagaagga aaaacttgtt tggaaaaaac tggacgaaca
1401 attggccaca aggaacgaga tcagaaaaga tctcaaagta aaatggaggt
1451 ggggactcta cagactagtc aagaaaacca ggaaggacaa ccaaagacag
1501 cgccgacaga ggcgcatggc gaaggaacag caattattga tggctatgcc
1551 acctcaagtt ctgacgggca tctccattgc tgggggtcca tcggcgagtc
1601 tggaaatgac tccaactccg aatgggaaga ttttctgcac gccttccatg
1651 aagaagaaga aaactttaaa atctcccaaa ttaacacaag agaaaattca
1701 cgagctcacg caggcagttc tgaaaattgc gtgcagaaaa aggatgagca
1751 tagaattggt ggacaagaag tccacaaaag ggcagtacaa gaaatttcaa
1801 ggagcaaatt atttgttcct tcatttaaaa catatggaag gcttaagaga
1851 gtcagtggat ttaagaattc acacaacaac tcaaaacctt gtacttcaag
1901 ctgccaaggt tggggcatgg aaaagaactg taaagacaac aatgttgtcc
1951 aaaggttcaa gtggcctggt gttgaatcca gacaaactgt tgggcccaag
2001 aggtcatgca ccacacggaa tgctcgtggt gcgtggggct ttacgaggag
2051 tgctatacga cgcacgaatg aaacttggta gatctgttct accatacatc
2101 atccagtata gctctactat ggaaagattt ctgtcaggct ttgataataa
2151 atttaaacaa atgagacaga cagatctgaa ccacgtatgt gaatcgagtt
2201 atgatgctga gcaagcagga tctgtagctg caatttcaca tcatatgctc
2251 tatccgatgg gaagaaccac ttgtaaattt tgtataaata atgtagaaga
2301 tatgagtaga gacgagtggt gtgaatatgt tagatctttc atcagtagga
2351 ataaaacatt atgtcagtct gaatataaga attttgtaca tttacctcaa
2401 ataatggatt ttctatctga ttcacttgtg aatacaaata aaaacctgaa
2451 agcatttaat gaaatccaga acctcattgg cgataggact gatgcgccat
2501 tcacaagtgt gtgtgaggtt aataaagtat tggtcaaagg cggtcgagct
2551 aaacctgacg agctaattaa agcatcagaa aaccttttgg aagtggctcg
2601 atatttgaaa aaccgcaccg agaacatcaa gaaaggttca ctacagtctt
2651 ttaggaataa gatatcacag aaatcatcag tgaatctagc cttaatgtgt
2701 gacaatcaac tggacaagaa tggcaattta atatggggtg aacggggcta
2751 tcactcaaaa agattctttg ccaactattt tgatgttatt gacccatctc
2801 aagggtatga gaaatatgtg attagagaga atccaaatgg atctcggaag
2851 ttggcaattg gaaagttgat agtgtccact aacttttctg tattcaggga
2901 gcaaatgaaa ggcgagccca ttcagaaaca aaaactagac aatcattgca
2951 ctagcctgcg cgatggaaat ttcgtatacc catgttgttg tgtgacactt
3001 gatgatggac agcctcttga atcagaattt aagttaccaa cgaagaatca
3051 cttggtaatt ggaaattcag gagatcccaa atatgttgac atgccaccag
3101 agattagcaa gaaaatgtac attgcaaagg atggttattg ttatgtaaac
3151 atctttctag ctatgcttgt taatgtaaac gaagccgagg ctaaagattt
3201 cactaaacaa gtgcgagatg tgttgatgga aaaattgggc aaatggccaa
3251 caatgtttga cgtagccact gcatgtgcat tcatgtcagt attctatcct
3301 gaaacaagaa atgctgaact tccaagaatt ctagttgatc actcaactaa
3351 aactatgcat gttgtggact cttttggctc attaagcaca ggatatcatg
3401 tcctgaaagc aaacacagtg agtcaattaa ttcagttctc aagtagctct
3451 ctggagtctg agatgaaaca ctacatagta ggcggtgtta cagcattgcc
3501 agatgtccaa gaaaggtgca tcagaacaat tataaaagga gtatacaaac
3551 cagatgttat gtatactatt ctatctgagg atccatatgc actcttatta
3601 agtgtgatgt caccacgcat actcttagcc ttactcaaca gcggatcact
3651 ggatagatca atggaagcat ggataacgga agaccaggaa gttgctgtaa
3701 tcataggtac actacaggag cttgcaaaga aggtatctac ttctagggta
3751 ctcgaaaagc aacttaaagt gatagagagt caagcacaca ctctattatt
3801 tgatccagcg tttgtgcgca gtagaacccc aagctttgca ctctcacaga
3851 aaatcattag aggcctagca gagggaagag aatcaaatag agtgctctat
3901 gaacaaggac attcaattgc gtcttatgca gcctcgcatg agcttatgga
3951 aaaaatttgg gatcgtcttt taaaggagga atacgaagga ctgccttggc
4001 atgga