Sequence of DPV Sweet potato virus C
Sweet potato feathery mottle virus gene for polyprotein, P1, HC-Pro and P3 region, partial cds, isolate: 19-T.
ACC No: AB509463
Dated: 2010-05-09 | Length: 3566 | CRC: 88558517
ID AB509463; SV 1; linear; genomic RNA; STD; VRL; 3566 BP.
XX
AC AB509463;
XX
DT 09-MAY-2010 (Rel. 104, Created)
DT 09-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE Sweet potato feathery mottle virus gene for polyprotein, P1, HC-Pro and P3
DE region, partial cds, isolate: 19-T.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-3566
RA Yamasaki S., Sakai J., Fuji S., Hanada K.;
RT ;
RL Submitted (19-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shuichi Yamasaki Oita Prefectural Agriculture, Forestry and
RL Fisheries Research Center, Safety Farming Research institute; Kitausa 65,
RL Usa, Oita 872-0103, Japan
XX
RN [2]
RX PUBMED; 20336334.
RA Yamasaki S., Sakai J., Fuji S., Kamisoyama S., Emoto K., Ohshima K.,
RA Hanada K.;
RT "Comparisons among isolates of Sweet potato feathery mottle virus using
RT complete genomic RNA sequences";
RL Arch. Virol. 155(5):795-800(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3566
FT /organism="Sweet potato feathery mottle virus"
FT /strain="C"
FT /isolate="19-T"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12844"
FT 5'UTR 1. .162
FT CDS 163. .>3566
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="BAJ07204.1"
FT /translation="MASATVSVKPAGKRKLTWKECCNKWGKAAMEQQQAAYPRRKVELS
FT RNQLAANIFAFVPETEWHKYYFGNRGGPSPQLEVLSNAIQYGEVFKYKFDFTFCPECDE
FT FLEGHKCEECGTIFRKTDDNLADNMNVVARELGGYDAYYASTWSEFEQAKLELEEVAPT
FT AGQLRRQARAAEKLLDKRSTRKEKEYVDSLWEAVEEAETKETGEASDASEKAAELSGIS
FT SSATADEMFPPLVGNKNTEVITTTSDVIVSECPNTQFGQINEFTPEEGKDEKVVESLVE
FT EAENVTVPAVMPIETGFFFGTIPAIIPLPVVVPQQGNMGVLQPAFMQVGTIPVNGIALA
FT DTHLEIKETAVKKAEPTKEDTDVGAQKSTSLPAHLYPWAPRPKNSGATRHQMVRKWVKK
FT TQEAEEVKQKAVWKKLDEQLAVRNEAKKDLKVKWRWGLYRLVKKTRKDNQRQRQKKRME
FT KEQQLLLAMPPQILTGISIAGGPVASLQETPTVSGKILSTPSMKRKRILKSPTLSFDKI
FT QELIQATLKIACKQGLQVEIINKKTVKGAYRQHGGTNHLFLHLKHMEGWRKPVDLHIHQ
FT EDIELVTMAARVGAWNKKFHTSQLCRGTSGLVLNPDKLTGPRGHAPKGLFVVRGALAGV
FT VYDARMRLGRSILPFIEQFSSTMERFLRGFDEKFKQLRQVDSDHVCESTYDAEQAGAVA
FT AIIHHMVCPMNRTTCKHCSNKIEDLSKDEWCDYVRNFASKNKLPFQLEFKDFKHLPLII
FT DFITDSLVQTNKDVRAFNEIQTLIGNRTDAPFTTVCEVNKVLVKGGRAKSAEFAKASEA
FT LLELARYLKNRTENIKKGSLQSFRNKISQKAAMNLALMCDNQLDKNGNLIWGERGYHSK
FT RFFSNYFEEINPEEGYSKYIVRSNPNGTRKLAIGKLIVSTNFSVFREQMKGEPIHKQKL
FT DNHCTSTLDGNFIYPCCCVTYDDGQPMESEFKLPTKNHLVIGNSGDPKYVDMPPEISKK
FT MYIAKEGYCYINIFLAMLVNVNEAEAKDFTKQVRDVLMEKLGKWPTMFDVATACAFMSV
FT FYPETRNAELPRILIDHTTKTMHVIDSFGSLSTGYHILKANTVSQLIKFANSSLDSEMK
FT HYLVGGLTALPANEERCVRTVIKGVYRP"
FT mat_peptide 163. .2124
FT /gene="P1"
FT mat_peptide 2125. .3498
FT /gene="HC-Pro"
FT /note="a protein with helper component activity and
FT proteolytic activity"
FT mat_peptide 3499. .>3566
FT /gene="P3"
XX
SQ Sequence 3566 BP; 1137 A; 702 C; 853 G; 874 T; 0 other;
ab509463 Length: 3566 09-MAY-2010 Type: N Check: 1995 ..
1 aaaaataaca caacacaata caacacaaca caactcaaac aagctttctt
51 tgcatttgat ttcacaactt ttcaaagtcg aacactctca atttaagctt
101 tttagatcgt ttgtcttttg tctatttcaa ggaaaatcca aaaatatttc
151 tgtttcaata gcatggcatc tgccaccgta tctgtgaagc cagctggtaa
201 gcgcaagctt acatggaaag aatgttgcaa caaatggggt aaggctgcaa
251 tggaacagca gcaagctgcg tacccaaggc gaaaggttga actgagtcgc
301 aaccaactgg ctgcgaatat tttcgcgttc gtgccagaaa ctgaatggca
351 caaatactac ttcggtaacc gtggaggtcc atctccacag ctagaagtgc
401 tctccaacgc catccagtat ggcgaagtat ttaagtacaa gttcgatttc
451 acattctgcc cagaatgtga cgagtttctt gaggggcaca agtgtgagga
501 gtgcggaacc atattccgca aaactgatga caacttggcg gacaatatga
551 atgtcgttgc cagggagctg ggaggatatg acgcatacta tgcgtctaca
601 tggtctgagt tcgagcaggc taagctcgaa ttggaggaag tagctccaac
651 tgctgggcaa ctcagaaggc aagcaagagc tgctgagaag ctgctggata
701 aacgatctac aaggaaagag aaggaatatg tggatagcct ttgggaggct
751 gttgaggagg ctgaaacaaa agaaactgga gaggcgtctg atgcctcaga
801 gaaagctgct gagctttctg ggatttcttc atcagcaaca gctgatgaga
851 tgtttccacc tcttgtggga aacaagaaca ctgaggttat cacaaccacg
901 tctgatgtga ttgtttctga gtgtccaaat actcagtttg gccagataaa
951 tgaatttacg ccagaagagg gcaaggatga gaaggtggtc gaatctcttg
1001 tggaagaggc tgaaaatgta actgtacctg cagtgatgcc tatagagact
1051 ggtttcttct tcgggaccat tcctgccatt atcccactgc cagttgtagt
1101 cccacagcag ggaaacatgg gagtgctgca acccgcattt atgcaagtgg
1151 gtactatacc agtgaatggt attgccctag ctgatactca cttagaaata
1201 aaagaaactg ctgttaagaa agctgaaccc acgaaagaag acaccgatgt
1251 aggtgcccag aaaagcacct ctttgccagc acacttgtat ccatgggcac
1301 ccaggcccaa aaattctggt gcaacacgcc atcagatggt tcgcaaatgg
1351 gtaaagaaga cccaggaagc tgaagaggtg aagcaaaaag ctgtatggaa
1401 aaaactggac gaacaattag cagttcggaa cgaagcaaag aaagacctca
1451 aagtgaagtg gaggtggggt ctttacaggt tggtcaaaaa gaccagaaag
1501 gacaatcaaa ggcagcggca gaagaaacga atggaaaagg agcaacaact
1551 gctccttgcg atgccacctc agattttaac gggcatttcg atagctggtg
1601 ggccagtagc gagtctgcag gagactccca cagtgagtgg gaagatttta
1651 tcgacgcctt ctatgaagcg gaaaaggatt ttaaaatctc caaccctgtc
1701 attcgacaag atacaagagt tgatacaagc aactttaaaa attgcttgca
1751 aacaagggct tcaagtggag attatcaaca agaaaaccgt gaaaggagct
1801 tacagacaac acggaggaac aaaccatttg ttccttcatt taaaacacat
1851 ggaaggatgg aggaagcctg tggatctgca catccaccaa gaggatatcg
1901 agcttgtaac aatggcagct cgcgtaggtg catggaacaa gaaattccat
1951 acaagccagc tatgcagagg taccagtggg ttagttctca acccagacaa
2001 gctgacaggt ccacgaggtc atgcgcccaa gggactcttc gtggttcgtg
2051 gggctttagc aggagtggta tacgacgcgc ggatgcgtct tggtaggtcc
2101 attttaccat tcatcgagca attcagctct acaatggaaa gatttctgcg
2151 cggttttgat gagaagttta aacaattaag gcaagttgat agcgaccatg
2201 tttgtgaatc aacatatgat gcagaacaag ctggggccgt agctgccatt
2251 atacaccata tggtgtgccc tatgaataga actacttgca aacactgctc
2301 gaataaaatc gaagatttga gtaaggacga atggtgtgat tatgttagaa
2351 actttgcaag taagaataaa cttccatttc agttagaatt taaggatttt
2401 aagcatttgc ctttaataat agattttatc acggactcac ttgtacaaac
2451 aaataaagat gtgagagcat ttaatgaaat tcagacctta attggtaata
2501 gaactgatgc accttttaca actgtttgtg aagtaaataa agtgttagtg
2551 aaaggtggca gggctaaaag tgctgaattc gccaaggcgt ctgaggcctt
2601 acttgaactt gcacgatacc tcaagaatcg tactgagaat atcaagaagg
2651 gatcactgca atcgttcaga aacaagatct cgcagaaggc tgcgatgaat
2701 ttagcactca tgtgcgacaa tcaattggac aagaatggca atctcatttg
2751 gggagaaagg ggatatcatt ccaagagatt cttctctaat tattttgagg
2801 agataaaccc tgaggaaggg tattcaaagt acattgtgcg gagcaaccca
2851 aatggcacaa ggaaattggc aataggcaaa ttaattgtct ccacaaactt
2901 ctcggtgttt agggagcaaa tgaaaggaga acccattcac aaacaaaagc
2951 ttgacaatca ttgcaccagt acacttgatg gaaatttcat ttatccgtgc
3001 tgttgtgtca cttatgatga tggacaaccc atggagtctg agtttaaatt
3051 gccaactaag aaccatcttg tcattggcaa ttctggggat ccgaaatatg
3101 ttgacatgcc tccagaaatt agcaagaaaa tgtacatcgc taaggaagga
3151 tattgttaca tcaatatatt tcttgctatg ctcgttaatg tcaatgaggc
3201 agaagcgaaa gacttcacta aacaagttcg tgatgttctc atggagaagc
3251 ttggaaagtg gccaacaatg ttcgatgtag ctacagcatg tgctttcatg
3301 tccgtgtttt atccagagac acgcaatgca gagttaccaa gaattttgat
3351 cgaccacact acgaagacca tgcatgtgat tgattcattt ggttcattga
3401 gcacaggata ccacatcttg aaggctaata cagttagcca gcttattaag
3451 tttgcgaaca gttcacttga ctccgaaatg aagcattatt tagttggggg
3501 cttaactgca ttaccagcta atgaggagag atgtgtgcgc accgtaataa
3551 aaggagtata cagacc