Sequence of DPV Japanese yam mosaic virus

Japanese yam mosaic virus gene for polyprotein (NIb and CP region), partial cds.

ACC No: AB539021

Dated: 2009-12-27 | Length: 2152 | CRC: -438879133

                
ID   AB539021; SV 1; linear; genomic RNA; STD; VRL; 2152 BP.
XX
AC   AB539021;
XX
DT   27-DEC-2009 (Rel. 103, Created)
DT   27-DEC-2009 (Rel. 103, Last updated, Version 1)
XX
DE   Japanese yam mosaic virus gene for polyprotein (NIb and CP region), partial
DE   cds.
XX
KW   .
XX
OS   Japanese yam mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-2152
RA   Kajihara H., Ito S.;
RT   ;
RL   Submitted (21-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Hiroshi Kajihara Yamaguchi Prefectural Technology Center for
RL   Agriculture and Forestry; Oouchimihori 1419, Yamaguchi 7530214, Japan
XX
RN   [2]
RA   Kajihara H.;
RT   "Control of mosaic disease in yam plants with mild strains of Japanese yam
RT   mosaic virus and molecular genetics of the virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2152
FT                   /organism="Japanese yam mosaic virus"
FT                   /strain="mild"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="Japanese yam"
FT                   /note="attenuated strain of Japanese yam mosaic virus;
FT                   YMO-6 vaccine"
FT                   /db_xref="taxon:79917"
FT   CDS             <1. .>1941
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /protein_id="BAI60051.1"
FT                   /translation="GKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKTCVDD
FT                   FNNQFYELNIKGPWSVGMTKFYGGWDELLTKLPDNWIHCDADGSQFDSSLSPYLINAVL
FT                   NIRLHFMESWDIGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVL
FT                   LALKYSLLKDGVKAEMHKQIIRYFVNGDDLLISIDPEYESLLDTMQGNFKELGLKYPFN
FT                   SRTKDKSELWFMSHQGKRIENMWVPKLLYPPIVSILEWDRSKEPSNRMEAICAAMIKSW
FT                   GHRGLTHQIRRFYGWLLGQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEIYLKA
FT                   IFEDYTTEPEDLLVYHQSGEDTLDAGTSDPGKSKKQEGPKSVQGESPATEGFEPGDDPT
FT                   RKGKQQTVINLEKDVNIGTMGTFAVPRGKGLATKMNMPRVRGKAAMNLDHLLLYNPEQV
FT                   DLANTRATRKQFDTWYDGVKRDYELDDSSMQIILNGLMVWCIENGTSPNVNGMWVMMDG
FT                   EEQIEYPIKPLIDHAKPTFRQIMAHFSNVAEAYIEKRNQERAYMPRYGLQRNLTDMSLA
FT                   RYGFDFYEVTSKPPARVREAHIQMKAAAFRGVQNKLFGLDGNVSTMEENTERHTAEDVN
FT                   RNMHSLLGVRGV"
FT   mat_peptide     <1. .1071
FT                   /gene="NIb"
FT                   /product="nuclear inclusion b"
FT   mat_peptide     1072. .>1941
FT                   /gene="CP"
FT                   /product="coat protein"
XX
SQ   Sequence 2152 BP; 713 A; 378 C; 517 G; 544 T; 0 other;

ab539021 Length: 2152  27-DEC-2009  Type: N  Check: 8809  ..

       1  ggaaaaatgg gtttgtggaa tggctctcta aaggcagaac tacgccctct
      51  agagaaggtg caggcaaata aaactcgcac tttcacagca gcaccactag
     101  acacattatt gggcgggaag acgtgtgttg acgatttcaa caatcaattt
     151  tatgagctca acataaaagg tccgtggagt gttggtatga caaagttcta
     201  tgggggatgg gatgagcttt taacgaagtt accagacaat tggatccact
     251  gtgatgccga tggttctcaa tttgatagtt ctttatcgcc ttatctgata
     301  aatgcagttc tgaacataag gttacatttc atggagtcat gggacatagg
     351  agaacaaatg ctgcgaaatc tgtacacaga aatcgtgtac actccaatcg
     401  caacaccaga tgggacaatt gtgaagaaat ttaaaggaaa caatagtggg
     451  caaccctcaa ctgttgttga caatacgctg atggtactgc tggctctcaa
     501  atattcatta ctcaaggatg gggttaaagc tgaaatgcac aagcaaataa
     551  tcagatactt tgtaaatggt gatgacctgc tgatcagcat agatccagaa
     601  tatgagagtc ttttagatac aatgcaaggg aatttcaagg aacttggtct
     651  taaatatcct ttcaattcta ggacaaaaga caaaagtgaa ctttggttta
     701  tgtctcatca aggaaaaaga attgaaaaca tgtgggtccc aaagttatta
     751  taccccccaa ttgtctcaat acttgaatgg gatcggtcaa aagaaccaag
     801  caataggatg gaagcaatat gtgctgcaat gatcaagtcg tggggtcacc
     851  gagggttaac tcatcagata cggagatttt acgggtggtt acttggacaa
     901  gctccatatt caggactggc agagattgga aaagcccctt acattgctga
     951  gagcgcactt cggaaattat atctagacaa agacgcagat cagagtgcta
    1001  ttgaaatcta tttgaaggca atatttgaag actatacaac tgaaccagaa
    1051  gatttgcttg tataccatca gagtggtgaa gatacattgg atgctggaac
    1101  gagcgatcca ggcaaatcaa agaagcagga aggcccgaag tctgtccaag
    1151  gcgagtcacc ggcaacagaa ggatttgaac caggggatga tccaacgaga
    1201  aaaggtaaac aacaaactgt aatcaatctg gaaaaggatg ttaatatcgg
    1251  tacaatgggg acttttgccg taccacgggg gaaaggacta gcaacaaaaa
    1301  tgaacatgcc tagagttaga gggaaagcag ctatgaatct agatcacttg
    1351  ttgctttaca atccagagca ggttgatcta gccaacacaa gagctacaag
    1401  gaaacagttt gacacatggt atgatggggt caaacgagat tatgaactgg
    1451  atgacagttc aatgcaaatt atcttgaatg gattgatggt ttggtgcatt
    1501  gagaatggaa cttcaccaaa cgtaaatgga atgtgggtta tgatggatgg
    1551  agaagagcaa atagaatatc caataaaacc actaatagat cacgccaaac
    1601  ccacattccg acagataatg gctcatttca gtaatgtcgc tgaagcatat
    1651  attgaaaaga gaaatcagga aagagcgtac atgccacgct atggacttca
    1701  gaggaacctg acagacatga gtcttgctcg ttacgggttt gatttttatg
    1751  aagtaacttc aaaaccacca gcaagagtgc gggaggctca tatccaaatg
    1801  aaagcagcag cctttagagg tgtgcagaac aaactgtttg gattggacgg
    1851  aaatgtcagc acaatggaag aaaacacgga gagacacaca gctgaagatg
    1901  tgaaccgcaa tatgcacagc cttctcggtg tgaggggtgt gtaagctatg
    1951  tgtaggtaat gatattatta tgtagtatcc tacccgttta gagttattcc
    2001  atatggtctt tacttttaag aatgaatgag atgagggtgg ccctcaaatc
    2051  tcttcctctt attgtgtgaa gaagtcgaac tcttctttgg tgtgattagg
    2101  tgtggtgtaa ctttgttacg aatcctttca catttgatta agagatagag
    2151  ac