Sequence of DPV Papaya ringspot virus
Papaya ringspot virus gene for polyprotein, partial cds, isolate: Mp19.
ACC No: AB583202
Dated: 2012-12-12 | Length: 1415 | CRC: -1304474591
ID AB583202; SV 1; linear; genomic RNA; STD; VRL; 1415 BP.
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AC AB583202;
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DT 27-FEB-2011 (Rel. 108, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE Papaya ringspot virus gene for polyprotein, partial cds, isolate: Mp19.
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KW .
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OS Papaya ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1415
RA Kim O., Natsuaki K.T., Lee K., Khin S.;
RT ;
RL Submitted (25-AUG-2010) to the INSDC.
RL Contact:Ok-Kyung Kim Tokyo University of Agriculture, Department of
RL International Agricultural Development, Graduate School of Agriculture;
RL Sakuragaoka 1-1-1, Setagaya, Tokyo 156-8502, Japan
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RN [2]
RA Kim O., Natsuaki K.T., Lee K., Khin S.;
RT "High genetic diversity among natural populations of Papaya ringspot virus
RT from cucurbits in Myanmar";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1415
FT /organism="Papaya ringspot virus"
FT /segment="3"
FT /host="Cucurbita moschata Duch. ex Lam."
FT /isolate="Mp19"
FT /mol_type="genomic RNA"
FT /country="Myanmar:Shan state"
FT /collection_date="Mar-2009"
FT /db_xref="taxon:12205"
FT CDS <1. .1228
FT /codon_start=2
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="BAJ78595.1"
FT /translation="KSKLPEDRLEAIMAAIIESWGYEELTDQIRKFYQWVLEQAPYNEL
FT AKQGKAPYVSELGLRRLYTSTRGSCAELEVYLSKYFEDESGDTPELVVYHESVGSNKQT
FT IASLQSKNVFYQSKDGAVDAGVNAKLKEKEEKEKEKEKEKEKEKEKEKEKDVPETSNQD
FT TKSEKERERDRDVNAGTIGSFTVPRIKTFTDKMILPKFKGKTVLNLNHLIQYNPQQIDI
FT SNTRATQSQFDKWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDVSGVWVMMDGET
FT QVDYPIKPLIEHATPTFRQIMAHFSNAAEAYIAKRNATERYMPRYGLKRNLTDISLARY
FT AFDFYEINSKTPDRAREAHMQMKAAALRNANRRLFGIDGSVSNREENTERHTVEDVDRD
FT MHSLLGMRK"
FT mat_peptide <1. .349
FT /gene="NIb"
FT /product="nuclear inclusion b"
FT mat_peptide 350. .1225
FT /gene="CP"
FT /product="capsid protein"
FT 3'UTR 1229. .1415
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SQ Sequence 1415 BP; 454 A; 261 C; 342 G; 358 T; 0 other;
ab583202 Length: 1415 12-DEC-2012 Type: N Check: 4989 ..
1 caagtctaag ctacctgagg atagactaga agcgataatg gcagctatta
51 ttgaatcatg gggttatgag gagctaacag atcaaattcg gaaattctac
101 caatgggttc tagaacaagc tccatacaat gagcttgcga agcaaggtaa
151 agcaccgtac gtttctgaac ttggccttcg gagattatac actagtactc
201 gcggttcttg tgcagagttg gaagtgtatc tctcgaaata ttttgaggac
251 gaaagtggag acacaccaga acttgtagtt tatcacgaat ctgtgggctc
301 aaataagcag accatcgctt ctttacaaag caagaatgta ttctatcaat
351 caaaggatgg tgctgtggat gctggagtta atgctaaatt gaaagaaaaa
401 gaggagaaag agaaagaaaa agaaaaggag aaggaaaaag aaaaggaaaa
451 ggaaaaagag aaagacgtgc ctgaaacatc taatcaggat acgaaatctg
501 agaaagaaag ggagagagat cgagatgtca atgctgggac aatagggagt
551 ttcactgttc cccgaattaa aacatttact gataagatga ttctacctaa
601 gttcaaagga aaaactgttt tgaacctgaa ccatctaatt cagtataacc
651 cacaacagat tgacatttca aacacgcgtg ccactcagag tcagtttgat
701 aaatggtacg aaggtgtgcg caatgattat ggtcttaatg acaacgagat
751 gcaagtaatg ttaaatggtt taatggtttg gtgtattgag aatggtactt
801 caccagatgt gtctggcgtc tgggtaatga tggatggcga gactcaagtc
851 gactatccta ttaaaccatt gattgaacac gcaacaccaa catttcgtca
901 aatcatggcg cactttagca atgcagctga ggcatacatc gcaaaaagga
951 acgcaacaga gcgatacatg cctcgttatg gcttgaagcg aaatttgact
1001 gacataagcc tcgctagata tgccttcgac ttttatgaaa taaactcaaa
1051 gactcctgac cgagctcgtg aggcacatat gcagatgaag gcagcggcac
1101 tccgcaacgc caacaggcgt ttatttggaa ttgacggtag cgtcagtaac
1151 agggaagaga acacggagag acacactgtt gaggatgtcg atcgcgacat
1201 gcactctctc cttggaatgc gcaagtgatg ttggttaggc gtagcttagc
1251 cgtgttcccc ctatagtata agtaaccgta tctaatagtg tggttttacc
1301 accgtattta cgatttagtg agggtggccc tccttgttgc ttgtattatt
1351 cacgctctct aagctttgtt ccagtgtggg tgtcccacgt gtgttcaaat
1401 cttttagaat gagag