Sequence of DPV Papaya ringspot virus
Papaya ringspot virus gene for polyprotein, partial cds, isolate: Mbo4.
ACC No: AB583207
Dated: 2012-12-12 | Length: 1415 | CRC: -1581239632
ID AB583207; SV 1; linear; genomic RNA; STD; VRL; 1415 BP.
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AC AB583207;
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DT 27-FEB-2011 (Rel. 108, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE Papaya ringspot virus gene for polyprotein, partial cds, isolate: Mbo4.
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KW .
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OS Papaya ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1415
RA Kim O., Natsuaki K.T., Lee K., Khin S.;
RT ;
RL Submitted (25-AUG-2010) to the INSDC.
RL Contact:Ok-Kyung Kim Tokyo University of Agriculture, Department of
RL International Agricultural Development, Graduate School of Agriculture;
RL Sakuragaoka 1-1-1, Setagaya, Tokyo 156-8502, Japan
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RN [2]
RA Kim O., Natsuaki K.T., Lee K., Khin S.;
RT "High genetic diversity among natural populations of Papaya ringspot virus
RT from cucurbits in Myanmar";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1415
FT /organism="Papaya ringspot virus"
FT /segment="3"
FT /host="Lagenaria siceraria (Molina) Standl."
FT /isolate="Mbo4"
FT /mol_type="genomic RNA"
FT /country="Myanmar:Mandalay division"
FT /collection_date="Sep-2007"
FT /db_xref="taxon:12205"
FT CDS <1. .1228
FT /codon_start=2
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="BAJ78600.1"
FT /translation="KSKLPEHRLEAIMAAIIESWGYEELTDQIRKFYQWVLEQAPYNEL
FT AKQGKAPYVSELGLRRLYTSTRGSCAELEVYLSKYFEDESGDTPELVVYHESVGSLKQT
FT LASLQSKNVFYQSKDGAVDAGVNAKLKEKEEKEKEKEKEKEKEKEKEKIKDAPEASSQK
FT TNSEKERERDRDVNAGTMGSFTVPRIKTFTDKMILPKFKGKTVLNLNHLIQYNPQQIDI
FT SNTRATQSQFDKWYEGVRNDYGLDDNEMQVMLNGLMVWCIENGTSPDVSGVWVMMDGDV
FT QVDYPIKPLIEHATPTFRQIMAHFSNAAEAYIAKRNATERYMPRYGLKRNLTDISLARY
FT AFDFYEINSKTPDRAREAHMQMKAAALRNANRRLFGIDGSVSNREENTERHTVEDVDRD
FT MHSLLGMRK"
FT mat_peptide <1. .349
FT /gene="NIb"
FT /product="nuclear inclusion b"
FT mat_peptide 350. .1225
FT /gene="CP"
FT /product="capsid protein"
FT 3'UTR 1229. .1415
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SQ Sequence 1415 BP; 442 A; 282 C; 345 G; 346 T; 0 other;
ab583207 Length: 1415 12-DEC-2012 Type: N Check: 8316 ..
1 caaatccaaa ctacccgagc acaggcttga agcaatcatg gctgccatca
51 ttgaatcgtg gggttacgag gagcttacag accaaattcg gaaattttac
101 caatgggttt tggagcaagc tccatacaat gaactcgcga agcagggtaa
151 agcaccatat gtttctgaac tcggacttcg aagactatac actagcaccc
201 gtggatcctg tgcagagctt gaagtatatc tttcaaagta cttcgaggat
251 gaaagtggtg acacaccaga gcttgtagta taccatgagt ctgtgggctc
301 gttgaaacaa actttagcat ccctacagag caagaacgtg ttctatcaat
351 caaaagatgg tgccgttgat gctggagtca atgccaaatt gaaagaaaag
401 gaagaaaagg aaaaagagaa agagaaagaa aaagaaaaag aaaaagagaa
451 agaaaagatt aaggacgcac ctgaagcgtc aagtcagaaa acaaactctg
501 agaaagaaag ggagagagat cgagatgtca atgctgggac aatggggagt
551 ttcactgttc ctcgtattaa aacattcact gataaaatga ttctacccaa
601 gttcaaagga aagactgttt tgaacttgaa tcacttgatt cagtacaatc
651 cacagcaaat tgatatctca aatacacgcg ccactcaaag tcaatttgac
701 aagtggtacg aaggtgtgcg taacgattat ggtctagatg acaatgagat
751 gcaggtgatg ctcaacggtt taatggtctg gtgcattgaa aatggaacct
801 ccccagacgt ttctggtgtc tgggtgatga tggacggcga cgttcaggtg
851 gattatccca tcaagccgtt aattgaacat gcaacaccaa cgtttcgtca
901 gattatggca cattttagta atgcagctga ggcatacatt gcaaagagga
951 atgcaactga acgatatatg cctcggtatg gattaaagag gaatttgact
1001 gacattagcc tcgccagata tgccttcgac ttttatgaga taaattcaaa
1051 gactcctgat cgagctcgag aagcacatat gcagatgaag gcagcggctc
1101 tccgaaacgc gaaccggcgc ttatttggaa ttgacggcag tgtcagcaac
1151 agggaagaga acacggagag acacactgtt gaggatgtcg accgcgacat
1201 gcactctctc cttggaatgc gtaagtgatg tcggctaggc ctggcttagc
1251 cctgttcccc ctatgatata agtaaccgta tctagtagtg tggtttcacc
1301 accgtattta cgtttcagtg agggtggccc tccttgttgc ttgtattatt
1351 cacattctct gagctttgtt tcagtgtggg tgtcccacgt gtactcaaat
1401 ctcttggaat gagag