Sequence of DPV Papaya ringspot virus
Papaya ringspot virus gene for polyprotein, partial cds, isolate: Mp14.
ACC No: AB583212
Dated: 2012-12-12 | Length: 1421 | CRC: -150683492
ID AB583212; SV 1; linear; genomic RNA; STD; VRL; 1421 BP.
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AC AB583212;
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DT 27-FEB-2011 (Rel. 108, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE Papaya ringspot virus gene for polyprotein, partial cds, isolate: Mp14.
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KW .
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OS Papaya ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1421
RA Kim O., Natsuaki K.T., Lee K., Khin S.;
RT ;
RL Submitted (25-AUG-2010) to the INSDC.
RL Contact:Ok-Kyung Kim Tokyo University of Agriculture, Department of
RL International Agricultural Development, Graduate School of Agriculture;
RL Sakuragaoka 1-1-1, Setagaya, Tokyo 156-8502, Japan
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RN [2]
RA Kim O., Natsuaki K.T., Lee K., Khin S.;
RT "High genetic diversity among natural populations of Papaya ringspot virus
RT from cucurbits in Myanmar";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1421
FT /organism="Papaya ringspot virus"
FT /segment="3"
FT /host="Cucurbita moschata Duch. ex Lam."
FT /isolate="Mp14"
FT /mol_type="genomic RNA"
FT /country="Myanmar:Shan state"
FT /collection_date="Mar-2009"
FT /db_xref="taxon:12205"
FT CDS <1. .1234
FT /codon_start=2
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="BAJ78605.1"
FT /translation="KSKLPEHRLEAIMAAIIESWGYEELTDQIRKFYQWVLEQAPYNEL
FT AKQGKAPYVSELGLRRLYTSTRGSCAELEVYLSKYFEDESGDTPELVVYHESVSPEKQT
FT VASLQSKNVFYQSKDGAVDAGVNAKLKEKEEKEKEKEKEKEREKEKEKEKLKNVPETSN
FT QDTESITERERDRDVNAGTMGSFTVPRIKTFTDKMILPKFKGKTVLNLNHLLQYNPLQF
FT DISNTRATRSQFDKWYEGVRNDYGLDDNEMAVMLNGLMVWCIENGTSPDVSGVWVMMDG
FT DTQVDYPIKPLIEHATPTFRQIMAHFSNAAEAYIAKRNATERYMPRYGLKRNLTDISLA
FT RYAFDFYEINSKTPDRAREAHMQMKAAALRNANRRLFGIDGSVSNREENTERHTVEDVE
FT RDMHSLLGMRK"
FT mat_peptide <1. .349
FT /gene="NIb"
FT /product="nuclear inclusion b"
FT mat_peptide 350. .1231
FT /gene="CP"
FT /product="capsid protein"
FT 3'UTR 1235. .1421
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SQ Sequence 1421 BP; 453 A; 275 C; 346 G; 347 T; 0 other;
ab583212 Length: 1421 12-DEC-2012 Type: N Check: 9672 ..
1 caagtctaag ctacctgagc atagattaga agcgataatg gcagctatta
51 ttgaatcatg gggctatgag gagctaacag atcaaattcg gaaattctac
101 cagtgggtgc tagaacaagc tccatacaat gaacttgcga agcaaggtaa
151 agcaccgtac gtttctgaac ttggccttcg gagattatac actagcactc
201 gcggctcctg tgcagagttg gaagtatatc tctcgaaata ttttgaggac
251 gaaagtggag acacaccaga acttgtagtt tatcacgaat ctgtgagccc
301 agagaagcag accgtcgctt ctttacaaag caagaacgta ttctatcaat
351 caaaggacgg tgctgtggat gctggagtta atgctaaact aaaagagaaa
401 gaggagaaag aaaaagaaaa agaaaaggag aaagaaagag aaaaagagaa
451 ggaaaaggaa aagctgaaga acgtgcctga aacatcgaac caggacacgg
501 aatcgataac agaaagggag agagatcgag atgtcaatgc tgggacaatg
551 gggagtttta ctgttccccg aattaaaaca tttactgaca aaatgattct
601 acctaagttc aaaggaaaga ctgttttgaa tttgaatcat ttacttcagt
651 ataatccact acagttcgac atttcaaaca cgcgtgccac tcggagtcag
701 tttgataagt ggtacgaagg tgtgcgcaat gattatggcc ttgatgacaa
751 tgaaatggca gtaatgctaa atggtctgat ggtttggtgt attgaaaacg
801 gcacatcacc agatgtatcc ggcgtctggg tgatgatgga cggtgatact
851 caagttgatt atcccatcaa accattaatt gaacatgcaa caccaacatt
901 tcgccaaatc atggcgcatt ttagcaatgc agctgaggca tacattgcaa
951 aaagaaatgc aacggagcga tatatgcccc gttatggctt gaagcgaaat
1001 ttgactgaca taagcctcgc cagatatgcc ttcgatttct atgaaataaa
1051 ctcaaagact cctgatcgag ctcgtgaggc acacatgcag atgaaggcag
1101 cggcactccg taacgccaac aggcgtttat ttggaattga cggtagtgtc
1151 agtaacaggg aagagaacac ggagagacac actgttgagg acgtcgaacg
1201 cgacatgcac tctctccttg gaatgcgcaa gtgatgtcgg ctaggcctgg
1251 cttagccgtg ttccccctat agtataagta accgtatcta atagtgtggt
1301 cataccaccg tatttacgtt ttagtgaggg ttgccctcct tgttgcttat
1351 attattcgag ttctttaagc tttgctccag tgtgggtgtc ccacgagtgc
1401 tcaaatcttt tagaatgaga g